8 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_09637	Ubiquitin-like domain-containing protein. (100 aa)
	A1O3_02308	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (194 aa)
	A1O3_06646	Uncharacterized protein. (223 aa)
	A1O3_05959	BZIP domain-containing protein. (252 aa)
	A1O3_01975	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O3_02509	Large subunit ribosomal protein L40e. (173 aa)
	URM1	Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by the MOCS3 homolog UBA4. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target pr [...] (107 aa)
	A1O3_06458	Uncharacterized protein. (656 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_01975	A1O3_02509	W9YI46	W9Y9D4	Ubiquitin-40S ribosomal protein S27a.	Large subunit ribosomal protein L40e.	0.980
A1O3_01975	A1O3_06458	W9YI46	W9XZ39	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.980
A1O3_01975	A1O3_09637	W9YI46	W9XKE0	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-like domain-containing protein.	0.818
A1O3_02308	A1O3_09637	W9Y8R1	W9XKE0	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	Ubiquitin-like domain-containing protein.	0.489
A1O3_02509	A1O3_01975	W9Y9D4	W9YI46	Large subunit ribosomal protein L40e.	Ubiquitin-40S ribosomal protein S27a.	0.980
A1O3_02509	A1O3_05959	W9Y9D4	W9YSM3	Large subunit ribosomal protein L40e.	BZIP domain-containing protein.	0.973
A1O3_02509	A1O3_09637	W9Y9D4	W9XKE0	Large subunit ribosomal protein L40e.	Ubiquitin-like domain-containing protein.	0.820
A1O3_05959	A1O3_02509	W9YSM3	W9Y9D4	BZIP domain-containing protein.	Large subunit ribosomal protein L40e.	0.973
A1O3_05959	A1O3_06458	W9YSM3	W9XZ39	BZIP domain-containing protein.	Uncharacterized protein.	0.973
A1O3_05959	A1O3_09637	W9YSM3	W9XKE0	BZIP domain-containing protein.	Ubiquitin-like domain-containing protein.	0.818
A1O3_06458	A1O3_01975	W9XZ39	W9YI46	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.980
A1O3_06458	A1O3_05959	W9XZ39	W9YSM3	Uncharacterized protein.	BZIP domain-containing protein.	0.973
A1O3_06458	A1O3_09637	W9XZ39	W9XKE0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.820
A1O3_06646	A1O3_09637	W9Y0U2	W9XKE0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.491
A1O3_09637	A1O3_01975	W9XKE0	W9YI46	Ubiquitin-like domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.818
A1O3_09637	A1O3_02308	W9XKE0	W9Y8R1	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy.	0.489
A1O3_09637	A1O3_02509	W9XKE0	W9Y9D4	Ubiquitin-like domain-containing protein.	Large subunit ribosomal protein L40e.	0.820
A1O3_09637	A1O3_05959	W9XKE0	W9YSM3	Ubiquitin-like domain-containing protein.	BZIP domain-containing protein.	0.818
A1O3_09637	A1O3_06458	W9XKE0	W9XZ39	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.820
A1O3_09637	A1O3_06646	W9XKE0	W9Y0U2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.491