5 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_08468	Small nuclear ribonucleoprotein B and B. (227 aa)
	A1O3_09626	Uncharacterized protein. (149 aa)
	A1O3_07446	WD_REPEATS_REGION domain-containing protein. (294 aa)
	A1O3_03892	Uncharacterized protein. (368 aa)
	A1O3_07058	Small nuclear ribonucleoprotein G. (80 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_07058	A1O3_08468	W9YEP2	W9XFI0	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein B and B.	0.987
A1O3_07058	A1O3_09626	W9YEP2	W9XJ95	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.960
A1O3_07446	A1O3_09626	W9XVW9	W9XJ95	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.771
A1O3_08468	A1O3_07058	W9XFI0	W9YEP2	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein G.	0.987
A1O3_08468	A1O3_09626	W9XFI0	W9XJ95	Small nuclear ribonucleoprotein B and B.	Uncharacterized protein.	0.867
A1O3_09626	A1O3_07058	W9XJ95	W9YEP2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.960
A1O3_09626	A1O3_07446	W9XJ95	W9XVW9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.771
A1O3_09626	A1O3_08468	W9XJ95	W9XFI0	Uncharacterized protein.	Small nuclear ribonucleoprotein B and B.	0.867