15 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_06277	Uncharacterized protein. (1320 aa)
	A1O3_09323	PLK protein kinase. (1048 aa)
	A1O3_09433	Uncharacterized protein. (218 aa)
	A1O3_08348	Uncharacterized protein. (645 aa)
	A1O3_08751	Uncharacterized protein. (541 aa)
	A1O3_07114	Csm1 domain-containing protein. (516 aa)
	A1O3_07224	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily. (326 aa)
	A1O3_05429	SUN domain-containing protein. (625 aa)
	A1O3_05101	HTH APSES-type domain-containing protein. (392 aa)
	A1O3_05263	Uncharacterized protein. (240 aa)
	A1O3_03525	Uncharacterized protein. (341 aa)
	A1O3_09790	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily. (372 aa)
	A1O3_03115	Uncharacterized protein. (309 aa)
	A1O3_03397	Uncharacterized protein. (614 aa)
	A1O3_02875	CDC7 protein kinase. (571 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_02875	A1O3_03397	W9YBB5	W9YB30	CDC7 protein kinase.	Uncharacterized protein.	0.491
A1O3_02875	A1O3_07224	W9YBB5	W9XVC8	CDC7 protein kinase.	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	0.704
A1O3_02875	A1O3_09323	W9YBB5	W9XCE3	CDC7 protein kinase.	PLK protein kinase.	0.691
A1O3_02875	A1O3_09790	W9YBB5	W9XBH1	CDC7 protein kinase.	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	0.704
A1O3_03115	A1O3_09433	W9YB14	W9XCQ5	Uncharacterized protein.	Uncharacterized protein.	0.921
A1O3_03397	A1O3_02875	W9YB30	W9YBB5	Uncharacterized protein.	CDC7 protein kinase.	0.491
A1O3_03397	A1O3_06277	W9YB30	W9YJM2	Uncharacterized protein.	Uncharacterized protein.	0.453
A1O3_03397	A1O3_07224	W9YB30	W9XVC8	Uncharacterized protein.	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	0.612
A1O3_03397	A1O3_09323	W9YB30	W9XCE3	Uncharacterized protein.	PLK protein kinase.	0.941
A1O3_03397	A1O3_09790	W9YB30	W9XBH1	Uncharacterized protein.	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	0.612
A1O3_05101	A1O3_05429	W9XW41	W9XW12	HTH APSES-type domain-containing protein.	SUN domain-containing protein.	0.844
A1O3_05429	A1O3_05101	W9XW12	W9XW41	SUN domain-containing protein.	HTH APSES-type domain-containing protein.	0.844
A1O3_05429	A1O3_09323	W9XW12	W9XCE3	SUN domain-containing protein.	PLK protein kinase.	0.769
A1O3_06277	A1O3_03397	W9YJM2	W9YB30	Uncharacterized protein.	Uncharacterized protein.	0.453
A1O3_07114	A1O3_07224	W9XU38	W9XVC8	Csm1 domain-containing protein.	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	0.489
A1O3_07114	A1O3_08348	W9XU38	W9XHR1	Csm1 domain-containing protein.	Uncharacterized protein.	0.464
A1O3_07114	A1O3_08751	W9XU38	W9XPI3	Csm1 domain-containing protein.	Uncharacterized protein.	0.935
A1O3_07114	A1O3_09790	W9XU38	W9XBH1	Csm1 domain-containing protein.	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	0.489
A1O3_07224	A1O3_02875	W9XVC8	W9YBB5	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	CDC7 protein kinase.	0.704
A1O3_07224	A1O3_03397	W9XVC8	W9YB30	CK1/CK1/CK1-D protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.612