STRINGSTRING
A1O3_09879 A1O3_09879 LSM4 LSM4 LSM8 LSM8 A1O3_09394 A1O3_09394 A1O3_08468 A1O3_08468 A1O3_08639 A1O3_08639 A1O3_08775 A1O3_08775 A1O3_09596 A1O3_09596 A1O3_09246 A1O3_09246 A1O3_09191 A1O3_09191 A1O3_06255 A1O3_06255 A1O3_06486 A1O3_06486 A1O3_06608 A1O3_06608 LSM3 LSM3 A1O3_05211 A1O3_05211 A1O3_05090 A1O3_05090 A1O3_03484 A1O3_03484 A1O3_04226 A1O3_04226 A1O3_04096 A1O3_04096 A1O3_02409 A1O3_02409 A1O3_04460 A1O3_04460 A1O3_06963 A1O3_06963 A1O3_07058 A1O3_07058 A1O3_00910 A1O3_00910 A1O3_03748 A1O3_03748
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A1O3_09879Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (90 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O3_09394U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O3_08468Small nuclear ribonucleoprotein B and B. (227 aa)
A1O3_08639Sm domain-containing protein. (130 aa)
A1O3_08775U6 snRNA-associated Sm-like protein LSm6. (91 aa)
A1O3_09596Nop domain-containing protein. (600 aa)
A1O3_09246Serine/threonine-protein kinase PRP4. (502 aa)
A1O3_09191Elongation factor 2. (982 aa)
A1O3_06255Uncharacterized protein. (659 aa)
A1O3_06486Uncharacterized protein. (945 aa)
A1O3_06608C2H2-type domain-containing protein. (217 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (101 aa)
A1O3_05211Small nuclear ribonucleoprotein Sm D2. (75 aa)
A1O3_05090Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
A1O3_03484Small nuclear ribonucleoprotein F. (78 aa)
A1O3_04226SFM domain-containing protein. (380 aa)
A1O3_04096MPN domain-containing protein. (2506 aa)
A1O3_02409Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
A1O3_04460Small nuclear ribonucleoprotein. (138 aa)
A1O3_06963Uncharacterized protein. (2222 aa)
A1O3_07058Small nuclear ribonucleoprotein G. (80 aa)
A1O3_00910Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
A1O3_03748Uncharacterized protein. (587 aa)
Your Current Organism:
Capronia epimyces
NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96
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