39 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O3_01423	Uncharacterized protein. (764 aa)
	A1O3_01121	WD_REPEATS_REGION domain-containing protein. (359 aa)
	A1O3_01863	Splicing factor subunit; Belongs to the SF3B5 family. (85 aa)
	A1O3_01571	RRM domain-containing protein. (116 aa)
	A1O3_00910	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
	A1O3_00023	GYF domain-containing protein. (460 aa)
	A1O3_01431	Uncharacterized protein. (413 aa)
	A1O3_00457	U2 small nuclear ribonucleoprotein A. (248 aa)
	A1O3_07058	Small nuclear ribonucleoprotein G. (80 aa)
	A1O3_06963	Uncharacterized protein. (2222 aa)
	A1O3_04460	Small nuclear ribonucleoprotein. (138 aa)
	A1O3_02630	Pre-mRNA-splicing factor ini1. (110 aa)
	A1O3_04448	Pre-mRNA-splicing factor rse1. (1210 aa)
	A1O3_04823	Uncharacterized protein. (252 aa)
	A1O3_09575	Uncharacterized protein. (384 aa)
	A1O3_04096	MPN domain-containing protein. (2506 aa)
	A1O3_03892	Uncharacterized protein. (368 aa)
	A1O3_04226	SFM domain-containing protein. (380 aa)
	A1O3_03821	PSP domain-containing protein. (592 aa)
	A1O3_06822	CID domain-containing protein. (861 aa)
	A1O3_05090	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	A1O3_07446	WD_REPEATS_REGION domain-containing protein. (294 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (101 aa)
	A1O3_07915	Uncharacterized protein. (338 aa)
	A1O3_06608	C2H2-type domain-containing protein. (217 aa)
	A1O3_06486	Uncharacterized protein. (945 aa)
	A1O3_06255	Uncharacterized protein. (659 aa)
	A1O3_07699	Pre-mRNA-splicing ATP-dependent RNA helicase PRP28. (830 aa)
	A1O3_09246	Serine/threonine-protein kinase PRP4. (502 aa)
	A1O3_09626	Uncharacterized protein. (149 aa)
	A1O3_09596	Nop domain-containing protein. (600 aa)
	A1O3_09561	Uncharacterized protein. (379 aa)
	A1O3_08775	U6 snRNA-associated Sm-like protein LSm6. (91 aa)
	A1O3_08769	Ubiquitin thiolesterase. (585 aa)
	A1O3_08639	Sm domain-containing protein. (130 aa)
	A1O3_08468	Small nuclear ribonucleoprotein B and B. (227 aa)
	A1O3_09394	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (90 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00023	A1O3_00910	W9YP86	W9YRV3	GYF domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.772
A1O3_00023	A1O3_01121	W9YP86	W9ZDH5	GYF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.795
A1O3_00023	A1O3_01431	W9YP86	W9YJ36	GYF domain-containing protein.	Uncharacterized protein.	0.818
A1O3_00023	A1O3_04096	W9YP86	W9Y3Q3	GYF domain-containing protein.	MPN domain-containing protein.	0.934
A1O3_00023	A1O3_04448	W9YP86	W9Y4R1	GYF domain-containing protein.	Pre-mRNA-splicing factor rse1.	0.501
A1O3_00023	A1O3_05090	W9YP86	W9XW29	GYF domain-containing protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.945
A1O3_00023	A1O3_06255	W9YP86	W9XPI5	GYF domain-containing protein.	Uncharacterized protein.	0.897
A1O3_00023	A1O3_06486	W9YP86	W9XQ43	GYF domain-containing protein.	Uncharacterized protein.	0.925
A1O3_00023	A1O3_06963	W9YP86	W9YEE0	GYF domain-containing protein.	Uncharacterized protein.	0.983
A1O3_00023	A1O3_07058	W9YP86	W9YEP2	GYF domain-containing protein.	Small nuclear ribonucleoprotein G.	0.448
A1O3_00023	A1O3_07699	W9YP86	W9XLL9	GYF domain-containing protein.	Pre-mRNA-splicing ATP-dependent RNA helicase PRP28.	0.926
A1O3_00023	A1O3_08468	W9YP86	W9XFI0	GYF domain-containing protein.	Small nuclear ribonucleoprotein B and B.	0.838
A1O3_00023	A1O3_08769	W9YP86	W9XG98	GYF domain-containing protein.	Ubiquitin thiolesterase.	0.678
A1O3_00023	A1O3_09596	W9YP86	W9XJ70	GYF domain-containing protein.	Nop domain-containing protein.	0.679
A1O3_00457	A1O3_00910	W9YGB4	W9YRV3	U2 small nuclear ribonucleoprotein A.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.997
A1O3_00457	A1O3_01121	W9YGB4	W9ZDH5	U2 small nuclear ribonucleoprotein A.	WD_REPEATS_REGION domain-containing protein.	0.930
A1O3_00457	A1O3_01423	W9YGB4	W9ZEG2	U2 small nuclear ribonucleoprotein A.	Uncharacterized protein.	0.979
A1O3_00457	A1O3_01571	W9YGB4	W9YTL7	U2 small nuclear ribonucleoprotein A.	RRM domain-containing protein.	0.962
A1O3_00457	A1O3_01863	W9YGB4	W9Z2Q4	U2 small nuclear ribonucleoprotein A.	Splicing factor subunit; Belongs to the SF3B5 family.	0.992
A1O3_00457	A1O3_02630	W9YGB4	W9YAL7	U2 small nuclear ribonucleoprotein A.	Pre-mRNA-splicing factor ini1.	0.999