29 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_08619	UBX domain-containing protein. (532 aa)
	A1O3_08097	Ubiquitin carboxyl-terminal hydrolase. (578 aa)
	A1O3_07862	Nuclear protein localization protein 4. (633 aa)
	A1O3_10353	Uncharacterized protein. (186 aa)
	A1O3_09637	Ubiquitin-like domain-containing protein. (100 aa)
	A1O3_09256	Polyubiquitin. (305 aa)
	A1O3_08772	Ubiquitin-like domain-containing protein. (494 aa)
	A1O3_08347	CAP-Gly domain-containing protein. (270 aa)
	A1O3_05496	Uncharacterized protein. (532 aa)
	A1O3_05501	Ubiquitin-like domain-containing protein. (265 aa)
	A1O3_06364	PH domain-containing protein. (698 aa)
	A1O3_06646	Uncharacterized protein. (223 aa)
	A1O3_03571	Autophagy-related protein. (118 aa)
	A1O3_04462	UBX domain-containing protein. (507 aa)
	A1O3_04584	UV excision repair protein Rad23. (403 aa)
	A1O3_02308	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt), autophagy vesicles formation, mitophagy, and nucleophagy. (194 aa)
	A1O3_02097	BAG domain-containing protein. (349 aa)
	A1O3_02509	Large subunit ribosomal protein L40e. (173 aa)
	A1O3_02550	Uncharacterized protein. (340 aa)
	A1O3_07782	Ubiquitin-like domain-containing protein. (322 aa)
	A1O3_01975	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O3_08544	UBX domain-containing protein. (496 aa)
	A1O3_03204	Ubiquitin-like domain-containing protein. (726 aa)
	A1O3_00610	UBX domain-containing protein. (547 aa)
	A1O3_00751	Uncharacterized protein. (413 aa)
	A1O3_03853	Uncharacterized protein. (306 aa)
	A1O3_04449	Uncharacterized protein. (505 aa)
	A1O3_00254	Uncharacterized protein. (403 aa)
	A1O3_09599	Ubiquitin-like domain-containing protein. (345 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00254	A1O3_00610	W9ZAZ2	W9YQW8	Uncharacterized protein.	UBX domain-containing protein.	0.891
A1O3_00254	A1O3_01975	W9ZAZ2	W9YI46	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.410
A1O3_00254	A1O3_03853	W9ZAZ2	W9YX92	Uncharacterized protein.	Uncharacterized protein.	0.912
A1O3_00254	A1O3_04449	W9ZAZ2	W9YYW9	Uncharacterized protein.	Uncharacterized protein.	0.411
A1O3_00254	A1O3_04462	W9ZAZ2	W9Y3W3	Uncharacterized protein.	UBX domain-containing protein.	0.969
A1O3_00254	A1O3_04584	W9ZAZ2	W9Y526	Uncharacterized protein.	UV excision repair protein Rad23.	0.481
A1O3_00254	A1O3_07862	W9ZAZ2	W9XH72	Uncharacterized protein.	Nuclear protein localization protein 4.	0.877
A1O3_00254	A1O3_08544	W9ZAZ2	W9XFP8	Uncharacterized protein.	UBX domain-containing protein.	0.986
A1O3_00254	A1O3_08619	W9ZAZ2	W9XFV9	Uncharacterized protein.	UBX domain-containing protein.	0.940
A1O3_00254	A1O3_09256	W9ZAZ2	W9XL93	Uncharacterized protein.	Polyubiquitin.	0.581
A1O3_00610	A1O3_00254	W9YQW8	W9ZAZ2	UBX domain-containing protein.	Uncharacterized protein.	0.891
A1O3_00610	A1O3_01975	W9YQW8	W9YI46	UBX domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.728
A1O3_00610	A1O3_02509	W9YQW8	W9Y9D4	UBX domain-containing protein.	Large subunit ribosomal protein L40e.	0.578
A1O3_00610	A1O3_04449	W9YQW8	W9YYW9	UBX domain-containing protein.	Uncharacterized protein.	0.719
A1O3_00610	A1O3_04462	W9YQW8	W9Y3W3	UBX domain-containing protein.	UBX domain-containing protein.	0.941
A1O3_00610	A1O3_04584	W9YQW8	W9Y526	UBX domain-containing protein.	UV excision repair protein Rad23.	0.762
A1O3_00610	A1O3_07862	W9YQW8	W9XH72	UBX domain-containing protein.	Nuclear protein localization protein 4.	0.458
A1O3_00610	A1O3_08544	W9YQW8	W9XFP8	UBX domain-containing protein.	UBX domain-containing protein.	0.853
A1O3_00610	A1O3_08619	W9YQW8	W9XFV9	UBX domain-containing protein.	UBX domain-containing protein.	0.909
A1O3_00610	A1O3_09256	W9YQW8	W9XL93	UBX domain-containing protein.	Polyubiquitin.	0.739