15 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_08282	NEK protein kinase. (769 aa)
	A1O3_10159	WD_REPEATS_REGION domain-containing protein. (825 aa)
	A1O3_10360	Cell division cycle 14. (621 aa)
	A1O3_09823	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (327 aa)
	A1O3_06641	Ubiquitin-conjugating enzyme E2 D/E. (158 aa)
	A1O3_03323	Cell division cycle 20-like protein 1, cofactor-APC complex. (583 aa)
	A1O3_05234	Cell cycle arrest protein BUB3. (348 aa)
	A1O3_04385	Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family. (182 aa)
	A1O3_04506	Cell division cycle 20, cofactor-APC complex. (615 aa)
	A1O3_01905	Mitotic spindle assembly checkpoint protein MAD2. (226 aa)
	A1O3_01975	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O3_06017	ANAPC5 domain-containing protein. (767 aa)
	A1O3_05959	BZIP domain-containing protein. (252 aa)
	A1O3_01218	Uncharacterized protein. (455 aa)
	A1O3_01136	BUB protein kinase. (1414 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_01136	A1O3_01905	W9ZDJ2	W9YHY3	BUB protein kinase.	Mitotic spindle assembly checkpoint protein MAD2.	0.999
A1O3_01136	A1O3_01975	W9ZDJ2	W9YI46	BUB protein kinase.	Ubiquitin-40S ribosomal protein S27a.	0.678
A1O3_01136	A1O3_03323	W9ZDJ2	W9Y0R9	BUB protein kinase.	Cell division cycle 20-like protein 1, cofactor-APC complex.	0.972
A1O3_01136	A1O3_04385	W9ZDJ2	W9YCQ0	BUB protein kinase.	Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family.	0.927
A1O3_01136	A1O3_04506	W9ZDJ2	W9YE55	BUB protein kinase.	Cell division cycle 20, cofactor-APC complex.	0.972
A1O3_01136	A1O3_05234	W9ZDJ2	W9Y4J2	BUB protein kinase.	Cell cycle arrest protein BUB3.	0.999
A1O3_01136	A1O3_05959	W9ZDJ2	W9YSM3	BUB protein kinase.	BZIP domain-containing protein.	0.678
A1O3_01136	A1O3_06017	W9ZDJ2	W9YIT0	BUB protein kinase.	ANAPC5 domain-containing protein.	0.987
A1O3_01136	A1O3_06641	W9ZDJ2	W9Y0R4	BUB protein kinase.	Ubiquitin-conjugating enzyme E2 D/E.	0.662
A1O3_01136	A1O3_08282	W9ZDJ2	W9XSP2	BUB protein kinase.	NEK protein kinase.	0.629
A1O3_01136	A1O3_09823	W9ZDJ2	W9XKU5	BUB protein kinase.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.721
A1O3_01136	A1O3_10159	W9ZDJ2	W9X957	BUB protein kinase.	WD_REPEATS_REGION domain-containing protein.	0.963
A1O3_01136	A1O3_10360	W9ZDJ2	W9X9R1	BUB protein kinase.	Cell division cycle 14.	0.530
A1O3_01218	A1O3_01975	W9YTS9	W9YI46	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.662
A1O3_01218	A1O3_03323	W9YTS9	W9Y0R9	Uncharacterized protein.	Cell division cycle 20-like protein 1, cofactor-APC complex.	0.609
A1O3_01218	A1O3_04385	W9YTS9	W9YCQ0	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family.	0.679
A1O3_01218	A1O3_04506	W9YTS9	W9YE55	Uncharacterized protein.	Cell division cycle 20, cofactor-APC complex.	0.609
A1O3_01218	A1O3_05959	W9YTS9	W9YSM3	Uncharacterized protein.	BZIP domain-containing protein.	0.662
A1O3_01218	A1O3_06017	W9YTS9	W9YIT0	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.635
A1O3_01218	A1O3_06641	W9YTS9	W9Y0R4	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 D/E.	0.553