59 items (Capronia epimyces) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	A1O3_08944	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1411 aa)
	A1O3_09264	Uncharacterized protein. (557 aa)
	A1O3_09418	RPOL4c domain-containing protein. (152 aa)
	A1O3_09263	DNA-directed RNA polymerase II subunit RPB7. (167 aa)
	A1O3_09559	Uncharacterized protein. (164 aa)
	A1O3_08641	RNA_pol_L_2 domain-containing protein. (293 aa)
	A1O3_06331	Uncharacterized protein. (635 aa)
	A1O3_08863	RING-type domain-containing protein. (261 aa)
	A1O3_07989	Replication factor C subunit 4. (352 aa)
	A1O3_06820	Uncharacterized protein. (563 aa)
	A1O3_04694	Uncharacterized protein. (506 aa)
	A1O3_06895	DNA repair helicase rad15. (820 aa)
	A1O3_07450	CYCLIN domain-containing protein; Belongs to the cyclin family. (387 aa)
	A1O3_04825	Pre-mRNA-splicing factor syf1. (861 aa)
	A1O3_05252	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A1O3_05050	Uncharacterized protein. (452 aa)
	A1O3_06449	Peptidylprolyl isomerase. (156 aa)
	A1O3_04867	Replication factor A2. (283 aa)
	A1O3_04306	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1761 aa)
	A1O3_04972	CBFD_NFYB_HMF domain-containing protein. (187 aa)
	A1O3_10397	Replication factor C subunit 1. (1083 aa)
	A1O3_04743	Pre-mRNA-processing factor 19. (465 aa)
	A1O3_04327	Uncharacterized protein. (978 aa)
	A1O3_05214	CULLIN_2 domain-containing protein; Belongs to the cullin family. (898 aa)
	A1O3_04453	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (51 aa)
	A1O3_05447	DNA-directed RNA polymerase II subunit RPB3. (336 aa)
	A1O3_05356	CPSF_A domain-containing protein. (1152 aa)
	A1O3_05494	AAA domain-containing protein. (963 aa)
	A1O3_05940	DNA-directed RNA polymerase I, II, and III subunit RPABC4. (78 aa)
	A1O3_08268	E3 ubiquitin-protein ligase RBX1. (125 aa)
	A1O3_01871	Uncharacterized protein. (78 aa)
	A1O3_04058	DNA-directed RNA polymerase I, II, and III subunit RPABC2. (152 aa)
	A1O3_03695	DNA-directed RNA polymerase I, II, and III subunit RPABC1. (238 aa)
	A1O3_04084	Uncharacterized protein. (1140 aa)
	A1O3_00307	Ubiquitin thiolesterase; Belongs to the peptidase C19 family. (1141 aa)
	A1O3_07629	WD_REPEATS_REGION domain-containing protein. (516 aa)
	A1O3_00618	Pre-mRNA-splicing factor isy1. (253 aa)
	A1O3_01975	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O3_02562	Uncharacterized protein. (312 aa)
	A1O3_02563	TFIIS central domain-containing protein. (888 aa)
	A1O3_01764	Uncharacterized protein. (375 aa)
	A1O3_05071	Uncharacterized protein. (237 aa)
	A1O3_05213	Uncharacterized protein. (132 aa)
	A1O3_05564	Peptidyl-prolyl isomerase D. (377 aa)
	A1O3_05664	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (508 aa)
	A1O3_00786	Replication factor C subunit 3/5. (408 aa)
	A1O3_05959	BZIP domain-containing protein. (252 aa)
	A1O3_01399	DNA excision repair protein ERCC-6. (1202 aa)
	A1O3_01487	Uncharacterized protein. (83 aa)
	A1O3_04027	AAA domain-containing protein. (397 aa)
	A1O3_04303	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	A1O3_02320	Zds_C domain-containing protein. (935 aa)
	A1O3_02636	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	A1O3_00199	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	A1O3_00319	DNA excision repair protein ERCC-3. (845 aa)
	A1O3_10168	Replication factor C subunit 5. (354 aa)
	A1O3_09144	USP domain-containing protein; Belongs to the peptidase C19 family. (1335 aa)
	A1O3_09200	Transcription elongation factor S-II. (305 aa)
	A1O3_07781	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (421 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00199	A1O3_00319	W9ZAU5	W9ZB55	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA excision repair protein ERCC-3.	0.999
A1O3_00199	A1O3_00786	W9ZAU5	W9YSJ0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Replication factor C subunit 3/5.	0.629
A1O3_00199	A1O3_01399	W9ZAU5	W9YT74	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA excision repair protein ERCC-6.	0.700
A1O3_00199	A1O3_01487	W9ZAU5	W9YUK5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.973
A1O3_00199	A1O3_01871	W9ZAU5	W9Y7I1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.998
A1O3_00199	A1O3_01975	W9ZAU5	W9YI46	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Ubiquitin-40S ribosomal protein S27a.	0.644
A1O3_00199	A1O3_03695	W9ZAU5	W9YBV1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase I, II, and III subunit RPABC1.	0.972
A1O3_00199	A1O3_04027	W9ZAU5	W9YXP7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	AAA domain-containing protein.	0.629
A1O3_00199	A1O3_04058	W9ZAU5	W9YBQ8	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase I, II, and III subunit RPABC2.	0.972
A1O3_00199	A1O3_04084	W9ZAU5	W9YCY7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.700
A1O3_00199	A1O3_04303	W9ZAU5	W9YYJ3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.974
A1O3_00199	A1O3_04306	W9ZAU5	W9Y3I6	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
A1O3_00199	A1O3_04453	W9ZAU5	W9Y4R4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.972
A1O3_00199	A1O3_04867	W9ZAU5	W9Y3H4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Replication factor A2.	0.760
A1O3_00199	A1O3_04972	W9ZAU5	W9Y3S1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	CBFD_NFYB_HMF domain-containing protein.	0.467
A1O3_00199	A1O3_05050	W9ZAU5	W9XVZ7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.999
A1O3_00199	A1O3_05213	W9ZAU5	W9YQK2	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.407
A1O3_00199	A1O3_05252	W9ZAU5	W9XVI9	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.972
A1O3_00199	A1O3_05356	W9ZAU5	W9Y631	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	CPSF_A domain-containing protein.	0.723
A1O3_00199	A1O3_05447	W9ZAU5	W9Y550	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-directed RNA polymerase II subunit RPB3.	0.975