6 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_05456	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (768 aa)
	A1O3_08268	E3 ubiquitin-protein ligase RBX1. (125 aa)
	A1O3_00922	Uncharacterized protein. (478 aa)
	A1O3_01975	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O3_05959	BZIP domain-containing protein. (252 aa)
	A1O3_01218	Uncharacterized protein. (455 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00922	A1O3_05456	W9YHN2	W9YR84	Uncharacterized protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.997
A1O3_01218	A1O3_01975	W9YTS9	W9YI46	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.662
A1O3_01218	A1O3_05959	W9YTS9	W9YSM3	Uncharacterized protein.	BZIP domain-containing protein.	0.662
A1O3_01975	A1O3_01218	W9YI46	W9YTS9	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.662
A1O3_01975	A1O3_05456	W9YI46	W9YR84	Ubiquitin-40S ribosomal protein S27a.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.683
A1O3_01975	A1O3_08268	W9YI46	W9XHJ5	Ubiquitin-40S ribosomal protein S27a.	E3 ubiquitin-protein ligase RBX1.	0.917
A1O3_05456	A1O3_00922	W9YR84	W9YHN2	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	Uncharacterized protein.	0.997
A1O3_05456	A1O3_01975	W9YR84	W9YI46	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	Ubiquitin-40S ribosomal protein S27a.	0.683
A1O3_05456	A1O3_05959	W9YR84	W9YSM3	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	BZIP domain-containing protein.	0.683
A1O3_05959	A1O3_01218	W9YSM3	W9YTS9	BZIP domain-containing protein.	Uncharacterized protein.	0.662
A1O3_05959	A1O3_05456	W9YSM3	W9YR84	BZIP domain-containing protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.683
A1O3_05959	A1O3_08268	W9YSM3	W9XHJ5	BZIP domain-containing protein.	E3 ubiquitin-protein ligase RBX1.	0.917
A1O3_08268	A1O3_01975	W9XHJ5	W9YI46	E3 ubiquitin-protein ligase RBX1.	Ubiquitin-40S ribosomal protein S27a.	0.917
A1O3_08268	A1O3_05959	W9XHJ5	W9YSM3	E3 ubiquitin-protein ligase RBX1.	BZIP domain-containing protein.	0.917