25 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_08468	Small nuclear ribonucleoprotein B and B. (227 aa)
	A1O3_08364	Uncharacterized protein. (648 aa)
	A1O3_10004	RRM domain-containing protein. (206 aa)
	A1O3_07914	Uncharacterized protein. (838 aa)
	A1O3_04774	Uncharacterized protein. (423 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (507 aa)
	A1O3_05262	Fip1 domain-containing protein. (330 aa)
	A1O3_05783	Uncharacterized protein. (304 aa)
	A1O3_06504	Nuclear cap-binding protein subunit 2. (178 aa)
	A1O3_03483	Uncharacterized protein. (119 aa)
	A1O3_03484	Small nuclear ribonucleoprotein F. (78 aa)
	A1O3_04241	Endoribonuclease ysh1. (862 aa)
	A1O3_04010	Uncharacterized protein. (238 aa)
	A1O3_04773	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A1O3_09245	DUF3453 domain-containing protein. (760 aa)
	A1O3_04349	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (607 aa)
	A1O3_07058	Small nuclear ribonucleoprotein G. (80 aa)
	A1O3_02194	WD_REPEATS_REGION domain-containing protein. (644 aa)
	A1O3_02281	RRM domain-containing protein. (291 aa)
	A1O3_01315	CPSF_A domain-containing protein. (1363 aa)
	A1O3_05289	Autocrine motility factor receptor. (277 aa)
	A1O3_00910	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
	A1O3_03385	Suf domain-containing protein. (1034 aa)
	A1O3_00444	Uncharacterized protein. (611 aa)
	A1O3_01286	Cleavage and polyadenylation specificity factor subunit 2. (949 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00444	A1O3_00910	W9ZBL9	W9YRV3	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.895
A1O3_00444	A1O3_01286	W9ZBL9	W9ZDX8	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.953
A1O3_00444	A1O3_01315	W9ZBL9	W9YJM9	Uncharacterized protein.	CPSF_A domain-containing protein.	0.954
A1O3_00444	A1O3_02194	W9ZBL9	W9YHI3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.941
A1O3_00444	A1O3_03385	W9ZBL9	W9YVY2	Uncharacterized protein.	Suf domain-containing protein.	0.978
A1O3_00444	A1O3_03483	W9ZBL9	W9Y145	Uncharacterized protein.	Uncharacterized protein.	0.785
A1O3_00444	A1O3_03484	W9ZBL9	W9Y218	Uncharacterized protein.	Small nuclear ribonucleoprotein F.	0.785
A1O3_00444	A1O3_04010	W9ZBL9	W9Y3H7	Uncharacterized protein.	Uncharacterized protein.	0.916
A1O3_00444	A1O3_04241	W9ZBL9	W9Y385	Uncharacterized protein.	Endoribonuclease ysh1.	0.963
A1O3_00444	A1O3_04349	W9ZBL9	W9YCL9	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.943
A1O3_00444	A1O3_04773	W9ZBL9	W9Y4F0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.823
A1O3_00444	A1O3_04774	W9ZBL9	W9XU64	Uncharacterized protein.	Uncharacterized protein.	0.823
A1O3_00444	A1O3_05262	W9ZBL9	W9XVJ7	Uncharacterized protein.	Fip1 domain-containing protein.	0.971
A1O3_00444	A1O3_05289	W9ZBL9	W9YQR9	Uncharacterized protein.	Autocrine motility factor receptor.	0.809
A1O3_00444	A1O3_05783	W9ZBL9	W9XXY7	Uncharacterized protein.	Uncharacterized protein.	0.785
A1O3_00444	A1O3_06504	W9ZBL9	W9XZ76	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.876
A1O3_00444	A1O3_07058	W9ZBL9	W9YEP2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.895
A1O3_00444	A1O3_07914	W9ZBL9	W9XQM4	Uncharacterized protein.	Uncharacterized protein.	0.878
A1O3_00444	A1O3_08364	W9ZBL9	W9XIN4	Uncharacterized protein.	Uncharacterized protein.	0.939
A1O3_00444	A1O3_08468	W9ZBL9	W9XFI0	Uncharacterized protein.	Small nuclear ribonucleoprotein B and B.	0.778