19 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_09077	Uncharacterized protein. (1002 aa)
	A1O3_05959	BZIP domain-containing protein. (252 aa)
	A1O3_02540	Uncharacterized protein. (1188 aa)
	A1O3_00945	Uncharacterized protein. (201 aa)
	A1O3_02824	Histone H2B; Belongs to the histone H2B family. (141 aa)
	A1O3_05560	Plus3 domain-containing protein. (610 aa)
	A1O3_05355	Uncharacterized protein. (984 aa)
	A1O3_04873	RING-type domain-containing protein. (208 aa)
	A1O3_04882	Uncharacterized protein. (1160 aa)
	A1O3_03611	Uncharacterized protein. (614 aa)
	A1O3_02312	Uncharacterized protein. (1018 aa)
	A1O3_01975	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O3_03192	Uncharacterized protein. (1184 aa)
	A1O3_03559	Uncharacterized protein. (503 aa)
	A1O3_02735	Uncharacterized protein. (465 aa)
	A1O3_08883	Uncharacterized protein. (1457 aa)
	A1O3_08187	Uncharacterized protein. (958 aa)
	A1O3_07315	Uncharacterized protein. (309 aa)
	A1O3_09564	Uncharacterized protein. (793 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00945	A1O3_01975	W9YRY3	W9YI46	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.572
A1O3_00945	A1O3_02824	W9YRY3	W9YA75	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.544
A1O3_00945	A1O3_03559	W9YRY3	W9YBG7	Uncharacterized protein.	Uncharacterized protein.	0.601
A1O3_00945	A1O3_05959	W9YRY3	W9YSM3	Uncharacterized protein.	BZIP domain-containing protein.	0.572
A1O3_01975	A1O3_00945	W9YI46	W9YRY3	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_02312	W9YI46	W9YJ11	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_02540	W9YI46	W9YAE3	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_02735	W9YI46	W9YAW3	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_02824	W9YI46	W9YA75	Ubiquitin-40S ribosomal protein S27a.	Histone H2B; Belongs to the histone H2B family.	0.871
A1O3_01975	A1O3_03192	W9YI46	W9YC68	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_03559	W9YI46	W9YBG7	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.983
A1O3_01975	A1O3_04873	W9YI46	W9Y4Q5	Ubiquitin-40S ribosomal protein S27a.	RING-type domain-containing protein.	0.644
A1O3_01975	A1O3_04882	W9YI46	W9Y3I9	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_05355	W9YI46	W9Y4V8	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_08187	W9YI46	W9XHC5	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_08883	W9YI46	W9XR01	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.735
A1O3_01975	A1O3_09077	W9YI46	W9XCJ4	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.572
A1O3_01975	A1O3_09564	W9YI46	W9XAV5	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.673
A1O3_02312	A1O3_01975	W9YJ11	W9YI46	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.572
A1O3_02312	A1O3_02824	W9YJ11	W9YA75	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.544