STRINGSTRING
A1O3_10346 A1O3_10346 LSM8 LSM8 A1O3_09394 A1O3_09394 A1O3_08468 A1O3_08468 A1O3_08775 A1O3_08775 A1O3_07714 A1O3_07714 LSM3 LSM3 A1O3_05211 A1O3_05211 A1O3_03484 A1O3_03484 A1O3_04773 A1O3_04773 A1O3_02409 A1O3_02409 A1O3_04460 A1O3_04460 A1O3_07058 A1O3_07058 A1O3_00910 A1O3_00910
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A1O3_10346Sm domain-containing protein. (203 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O3_09394U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O3_08468Small nuclear ribonucleoprotein B and B. (227 aa)
A1O3_08775U6 snRNA-associated Sm-like protein LSm6. (91 aa)
A1O3_07714Sm domain-containing protein. (117 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (101 aa)
A1O3_05211Small nuclear ribonucleoprotein Sm D2. (75 aa)
A1O3_03484Small nuclear ribonucleoprotein F. (78 aa)
A1O3_04773Small nuclear ribonucleoprotein Sm D3. (116 aa)
A1O3_02409Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (132 aa)
A1O3_04460Small nuclear ribonucleoprotein. (138 aa)
A1O3_07058Small nuclear ribonucleoprotein G. (80 aa)
A1O3_00910Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
Your Current Organism:
Capronia epimyces
NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.