55 items (Capronia epimyces) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O3_07450	CYCLIN domain-containing protein; Belongs to the cyclin family. (387 aa)
	A1O3_09749	DNA excision repair protein ERCC-1. (373 aa)
	A1O3_09559	Uncharacterized protein. (164 aa)
	A1O3_08268	E3 ubiquitin-protein ligase RBX1. (125 aa)
	A1O3_10168	Replication factor C subunit 5. (354 aa)
	A1O3_07598	Uncharacterized protein. (1010 aa)
	A1O3_07781	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (421 aa)
	A1O3_08541	DNA polymerase delta subunit 2. (511 aa)
	A1O3_06196	Vezatin domain-containing protein. (588 aa)
	A1O3_06206	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (228 aa)
	A1O3_08778	HMG box domain-containing protein. (567 aa)
	A1O3_06331	Uncharacterized protein. (635 aa)
	A1O3_08863	RING-type domain-containing protein. (261 aa)
	A1O3_06502	DNA_pol_E_B domain-containing protein. (859 aa)
	A1O3_07989	Replication factor C subunit 4. (352 aa)
	A1O3_06820	Uncharacterized protein. (563 aa)
	A1O3_04694	Uncharacterized protein. (506 aa)
	A1O3_06895	DNA repair helicase rad15. (820 aa)
	A1O3_07717	DNA excision repair protein ERCC-5. (1309 aa)
	A1O3_05050	Uncharacterized protein. (452 aa)
	A1O3_06283	Uncharacterized protein. (211 aa)
	A1O3_03294	DNA excision repair protein ERCC-4. (943 aa)
	A1O3_04852	DNA polymerase. (1107 aa)
	A1O3_04867	Replication factor A2. (283 aa)
	A1O3_04207	DNA ligase. (900 aa)
	A1O3_10397	Replication factor C subunit 1. (1083 aa)
	A1O3_05214	CULLIN_2 domain-containing protein; Belongs to the cullin family. (898 aa)
	A1O3_04584	UV excision repair protein Rad23. (403 aa)
	A1O3_05180	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (176 aa)
	A1O3_05356	CPSF_A domain-containing protein. (1152 aa)
	A1O3_05494	AAA domain-containing protein. (963 aa)
	A1O3_01871	Uncharacterized protein. (78 aa)
	A1O3_04084	Uncharacterized protein. (1140 aa)
	A1O3_07629	WD_REPEATS_REGION domain-containing protein. (516 aa)
	A1O3_00777	Stn1 domain-containing protein. (296 aa)
	A1O3_00733	Uncharacterized protein. (1150 aa)
	A1O3_01189	CBFD_NFYB_HMF domain-containing protein. (330 aa)
	A1O3_01593	DNA ligase. (867 aa)
	A1O3_01764	Uncharacterized protein. (375 aa)
	A1O3_02798	Helicase ATP-binding domain-containing protein. (837 aa)
	A1O3_00175	Uncharacterized protein. (296 aa)
	A1O3_05071	Uncharacterized protein. (237 aa)
	A1O3_05213	Uncharacterized protein. (132 aa)
	A1O3_00775	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2242 aa)
	A1O3_05664	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (508 aa)
	A1O3_00786	Replication factor C subunit 3/5. (408 aa)
	A1O3_01399	DNA excision repair protein ERCC-6. (1202 aa)
	A1O3_01713	Uncharacterized protein. (1127 aa)
	A1O3_04027	AAA domain-containing protein. (397 aa)
	A1O3_02320	Zds_C domain-containing protein. (935 aa)
	A1O3_02636	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (608 aa)
	A1O3_00199	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	A1O3_00319	DNA excision repair protein ERCC-3. (845 aa)
	A1O3_00704	DNA-repair protein complementing XP-A cells. (362 aa)
	A1O3_01311	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (535 aa)

Your Current Organism:

Capronia epimyces

NCBI taxonomy Id: 1182542
Other names: C. epimyces CBS 606.96, Capronia epimyces CBS 606.96

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O3_00175	A1O3_00777	W9YPM2	W9YH50	Uncharacterized protein.	Stn1 domain-containing protein.	0.755
A1O3_00175	A1O3_02636	W9YPM2	W9Z500	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.769
A1O3_00175	A1O3_04867	W9YPM2	W9Y3H4	Uncharacterized protein.	Replication factor A2.	0.755
A1O3_00175	A1O3_05180	W9YPM2	W9Y5M2	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.797
A1O3_00175	A1O3_06283	W9YPM2	W9XYM3	Uncharacterized protein.	Uncharacterized protein.	0.776
A1O3_00199	A1O3_00319	W9ZAU5	W9ZB55	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA excision repair protein ERCC-3.	0.999
A1O3_00199	A1O3_00704	W9ZAU5	W9ZCB3	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA-repair protein complementing XP-A cells.	0.929
A1O3_00199	A1O3_00733	W9ZAU5	W9YHZ9	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.875
A1O3_00199	A1O3_00777	W9ZAU5	W9YH50	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Stn1 domain-containing protein.	0.707
A1O3_00199	A1O3_00786	W9ZAU5	W9YSJ0	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Replication factor C subunit 3/5.	0.629
A1O3_00199	A1O3_01311	W9ZAU5	W9ZE04	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.654
A1O3_00199	A1O3_01399	W9ZAU5	W9YT74	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA excision repair protein ERCC-6.	0.700
A1O3_00199	A1O3_01713	W9ZAU5	W9YV62	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.875
A1O3_00199	A1O3_01871	W9ZAU5	W9Y7I1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.998
A1O3_00199	A1O3_02798	W9ZAU5	W9YKF4	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Helicase ATP-binding domain-containing protein.	0.966
A1O3_00199	A1O3_03294	W9ZAU5	W9Y1J5	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA excision repair protein ERCC-4.	0.718
A1O3_00199	A1O3_04027	W9ZAU5	W9YXP7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	AAA domain-containing protein.	0.629
A1O3_00199	A1O3_04084	W9ZAU5	W9YCY7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	Uncharacterized protein.	0.700
A1O3_00199	A1O3_04584	W9ZAU5	W9Y526	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	UV excision repair protein Rad23.	0.757
A1O3_00199	A1O3_04852	W9ZAU5	W9Y3G1	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	DNA polymerase.	0.464