14 items (Cladophialophora psammophila) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O5_07656	RING-CH-type domain-containing protein. (361 aa)
	A1O5_03693	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (600 aa)
	A1O5_08405	Uncharacterized protein. (230 aa)
	A1O5_07120	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (603 aa)
	A1O5_12601	Ubiquitin-like domain-containing protein. (307 aa)
	A1O5_13146	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (750 aa)
	A1O5_12826	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (1132 aa)
	A1O5_00918	RING-CH-type domain-containing protein. (1669 aa)
	A1O5_01781	Uncharacterized protein. (232 aa)
	A1O5_08664	BZIP domain-containing protein. (265 aa)
	A1O5_03438	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	A1O5_02003	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (607 aa)
	A1O5_03429	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (883 aa)
	A1O5_03293	Uncharacterized protein. (1465 aa)

Your Current Organism:

Cladophialophora psammophila

NCBI taxonomy Id: 1182543
Other names: C. psammophila CBS 110553, Cladophialophora psammophila CBS 110553

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O5_00918	A1O5_12601	W9XGF7	W9WCV1	RING-CH-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.476
A1O5_01781	A1O5_12601	W9XCP1	W9WCV1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.787
A1O5_02003	A1O5_13146	W9X496	W9W4S2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.601
A1O5_03293	A1O5_12826	W9WZ86	W9VPI6	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.612
A1O5_03429	A1O5_03693	W9WZL8	W9WWG0	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.702
A1O5_03429	A1O5_07120	W9WZL8	W9WPD6	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.698
A1O5_03438	A1O5_12601	W9X9R4	W9WCV1	Ubiquitin-40S ribosomal protein S27a.	Ubiquitin-like domain-containing protein.	0.969
A1O5_03693	A1O5_03429	W9WWG0	W9WZL8	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.702
A1O5_03693	A1O5_13146	W9WWG0	W9W4S2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.715
A1O5_07120	A1O5_03429	W9WPD6	W9WZL8	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.698
A1O5_07120	A1O5_13146	W9WPD6	W9W4S2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.711
A1O5_08405	A1O5_12601	W9WVC9	W9WCV1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.787
A1O5_08664	A1O5_12601	W9XC89	W9WCV1	BZIP domain-containing protein.	Ubiquitin-like domain-containing protein.	0.965
A1O5_12601	A1O5_00918	W9WCV1	W9XGF7	Ubiquitin-like domain-containing protein.	RING-CH-type domain-containing protein.	0.476
A1O5_12601	A1O5_01781	W9WCV1	W9XCP1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.787
A1O5_12601	A1O5_03438	W9WCV1	W9X9R4	Ubiquitin-like domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.969
A1O5_12601	A1O5_08405	W9WCV1	W9WVC9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.787
A1O5_12601	A1O5_08664	W9WCV1	W9XC89	Ubiquitin-like domain-containing protein.	BZIP domain-containing protein.	0.965
A1O5_12826	A1O5_03293	W9VPI6	W9WZ86	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.612
A1O5_13146	A1O5_02003	W9W4S2	W9X496	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.601