(8 nodes) RNA polymerase II, core complex network (Cladophialophora yegresii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_07590	S1 domain-containing protein. (167 aa)
	A1O7_09328	Uncharacterized protein. (87 aa)
	A1O7_06040	Uncharacterized protein. (66 aa)
	A1O7_02005	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1266 aa)
	A1O7_02010	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1760 aa)
	A1O7_08734	DNA-directed RNA polymerase II subunit RPB3. (334 aa)
	A1O7_07093	RPOL4c domain-containing protein. (152 aa)
	A1O7_01235	RNA_pol_L_2 domain-containing protein. (271 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_01235	A1O7_02005	W9WJX5	W9W0G2	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A1O7_01235	A1O7_02010	W9WJX5	W9W0G9	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A1O7_01235	A1O7_06040	W9WJX5	W9VSS7	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
A1O7_01235	A1O7_07093	W9WJX5	W9WDZ6	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.999
A1O7_01235	A1O7_07590	W9WJX5	W9VNX0	RNA_pol_L_2 domain-containing protein.	S1 domain-containing protein.	0.999
A1O7_01235	A1O7_08734	W9WJX5	W9WB76	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase II subunit RPB3.	0.999
A1O7_01235	A1O7_09328	W9WJX5	W9VPC5	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
A1O7_02005	A1O7_01235	W9W0G2	W9WJX5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.999
A1O7_02005	A1O7_02010	W9W0G2	W9W0G9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A1O7_02005	A1O7_06040	W9W0G2	W9VSS7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
A1O7_02005	A1O7_07093	W9W0G2	W9WDZ6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
A1O7_02005	A1O7_07590	W9W0G2	W9VNX0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	S1 domain-containing protein.	0.999
A1O7_02005	A1O7_08734	W9W0G2	W9WB76	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
A1O7_02005	A1O7_09328	W9W0G2	W9VPC5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
A1O7_02010	A1O7_01235	W9W0G9	W9WJX5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.999
A1O7_02010	A1O7_02005	W9W0G9	W9W0G2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A1O7_02010	A1O7_06040	W9W0G9	W9VSS7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
A1O7_02010	A1O7_07093	W9W0G9	W9WDZ6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.999
A1O7_02010	A1O7_07590	W9W0G9	W9VNX0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	S1 domain-containing protein.	0.999
A1O7_02010	A1O7_08734	W9W0G9	W9WB76	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999