11 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_08723	Small nuclear ribonucleoprotein Sm D2. (75 aa)
	A1O7_09033	U1 small nuclear ribonucleoprotein 70kDa. (406 aa)
	A1O7_05863	Small nuclear ribonucleoprotein G. (69 aa)
	A1O7_08996	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A1O7_04409	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (180 aa)
	A1O7_09834	Nuclear cap-binding protein subunit 2. (177 aa)
	A1O7_08291	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	A1O7_03148	Uncharacterized protein. (848 aa)
	A1O7_03275	Small nuclear ribonucleoprotein F. (93 aa)
	A1O7_00442	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (130 aa)
	A1O7_01159	Small nuclear ribonucleoprotein B and B. (212 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00442	A1O7_01159	W9WHL3	W9WJN0	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein B and B.	0.998
A1O7_00442	A1O7_03148	W9WHL3	W9WCJ0	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.981
A1O7_00442	A1O7_03275	W9WHL3	W9WCX7	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein F.	0.999
A1O7_00442	A1O7_04409	W9WHL3	W9VWP2	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.995
A1O7_00442	A1O7_05863	W9WHL3	W9VSB3	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
A1O7_00442	A1O7_08291	W9WHL3	W9W9Z3	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A1O7_00442	A1O7_08723	W9WHL3	W9VJU7	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
A1O7_00442	A1O7_08996	W9WHL3	W9VSS5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
A1O7_00442	A1O7_09033	W9WHL3	W9VK83	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein 70kDa.	0.996
A1O7_00442	A1O7_09834	W9WHL3	W9W7F7	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit 2.	0.987
A1O7_01159	A1O7_00442	W9WJN0	W9WHL3	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.998
A1O7_01159	A1O7_03148	W9WJN0	W9WCJ0	Small nuclear ribonucleoprotein B and B.	Uncharacterized protein.	0.984
A1O7_01159	A1O7_03275	W9WJN0	W9WCX7	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein F.	0.998
A1O7_01159	A1O7_04409	W9WJN0	W9VWP2	Small nuclear ribonucleoprotein B and B.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.993
A1O7_01159	A1O7_05863	W9WJN0	W9VSB3	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein G.	0.997
A1O7_01159	A1O7_08291	W9WJN0	W9W9Z3	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
A1O7_01159	A1O7_08723	W9WJN0	W9VJU7	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein Sm D2.	0.998
A1O7_01159	A1O7_08996	W9WJN0	W9VSS5	Small nuclear ribonucleoprotein B and B.	Small nuclear ribonucleoprotein Sm D3.	0.998
A1O7_01159	A1O7_09033	W9WJN0	W9VK83	Small nuclear ribonucleoprotein B and B.	U1 small nuclear ribonucleoprotein 70kDa.	0.987
A1O7_01159	A1O7_09834	W9WJN0	W9W7F7	Small nuclear ribonucleoprotein B and B.	Nuclear cap-binding protein subunit 2.	0.968