17 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (145 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (205 aa)
	A1O7_08978	PAT1 domain-containing protein. (819 aa)
	A1O7_07106	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O7_07287	NTP_transf_9 domain-containing protein. (163 aa)
	A1O7_10112	Uncharacterized protein. (245 aa)
	A1O7_04601	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1411 aa)
	A1O7_02471	Small nuclear ribonucleoprotein. (133 aa)
	A1O7_04052	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (513 aa)
	A1O7_04143	Uncharacterized protein. (254 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (150 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O7_08704	Nudix hydrolase domain-containing protein. (889 aa)
	A1O7_08895	Uncharacterized protein. (688 aa)
	A1O7_01729	Small nuclear ribonucleoprotein. (95 aa)
	A1O7_03317	Uncharacterized protein. (339 aa)
	A1O7_05017	Uncharacterized protein. (582 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_01729	A1O7_02471	W9WBT6	W9W264	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein.	0.999
A1O7_01729	A1O7_03317	W9WBT6	W9WD09	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.747
A1O7_01729	A1O7_04052	W9WBT6	W9W4I8	Small nuclear ribonucleoprotein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.812
A1O7_01729	A1O7_04143	W9WBT6	W9W4S7	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.695
A1O7_01729	A1O7_04601	W9WBT6	W9VXQ9	Small nuclear ribonucleoprotein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.801
A1O7_01729	A1O7_07106	W9WBT6	W9VM39	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O7_01729	A1O7_07287	W9WBT6	W9VN39	Small nuclear ribonucleoprotein.	NTP_transf_9 domain-containing protein.	0.695
A1O7_01729	A1O7_08704	W9WBT6	W9WB47	Small nuclear ribonucleoprotein.	Nudix hydrolase domain-containing protein.	0.695
A1O7_01729	A1O7_08895	W9WBT6	W9WBQ0	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.660
A1O7_01729	A1O7_08978	W9WBT6	W9VK29	Small nuclear ribonucleoprotein.	PAT1 domain-containing protein.	0.999
A1O7_01729	A1O7_10112	W9WBT6	W9VRI4	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.968
A1O7_01729	LSM1	W9WBT6	W9VGZ3	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.968
A1O7_01729	LSM3	W9WBT6	W9WAZ9	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O7_01729	LSM4	W9WBT6	W9VG97	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O7_01729	LSM5	W9WBT6	W9WAE1	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
A1O7_02471	A1O7_01729	W9W264	W9WBT6	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein.	0.999
A1O7_02471	A1O7_03317	W9W264	W9WD09	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.841
A1O7_02471	A1O7_04052	W9W264	W9W4I8	Small nuclear ribonucleoprotein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.995
A1O7_02471	A1O7_04143	W9W264	W9W4S7	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.738
A1O7_02471	A1O7_04601	W9W264	W9VXQ9	Small nuclear ribonucleoprotein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.704