28 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_10112	Uncharacterized protein. (245 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (145 aa)
	A1O7_10109	Protein vts1. (614 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (205 aa)
	A1O7_08561	Uncharacterized protein. (600 aa)
	A1O7_08541	Uncharacterized protein. (357 aa)
	A1O7_08978	PAT1 domain-containing protein. (819 aa)
	A1O7_07106	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O7_07296	Uncharacterized protein. (2127 aa)
	A1O7_07287	NTP_transf_9 domain-containing protein. (163 aa)
	A1O7_07590	S1 domain-containing protein. (167 aa)
	A1O7_07946	SurE domain-containing protein. (752 aa)
	A1O7_08892	Uncharacterized protein. (481 aa)
	A1O7_04601	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1411 aa)
	A1O7_07395	Endo/exonuclease/phosphatase domain-containing protein. (747 aa)
	A1O7_06067	RNB domain-containing protein. (1353 aa)
	A1O7_06230	Uncharacterized protein. (400 aa)
	A1O7_03360	Uncharacterized protein. (484 aa)
	A1O7_04052	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (513 aa)
	A1O7_04143	Uncharacterized protein. (254 aa)
	A1O7_02412	Cellular nucleic acid-binding protein. (229 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O7_08704	Nudix hydrolase domain-containing protein. (889 aa)
	A1O7_01729	Small nuclear ribonucleoprotein. (95 aa)
	A1O7_03317	Uncharacterized protein. (339 aa)
	A1O7_07093	RPOL4c domain-containing protein. (152 aa)
	A1O7_05017	Uncharacterized protein. (582 aa)
	A1O7_05212	Uncharacterized protein. (1454 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_01729	A1O7_03317	W9WBT6	W9WD09	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.747
A1O7_01729	A1O7_04052	W9WBT6	W9W4I8	Small nuclear ribonucleoprotein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.812
A1O7_01729	A1O7_04143	W9WBT6	W9W4S7	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.695
A1O7_01729	A1O7_04601	W9WBT6	W9VXQ9	Small nuclear ribonucleoprotein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.801
A1O7_01729	A1O7_07106	W9WBT6	W9VM39	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O7_01729	A1O7_07287	W9WBT6	W9VN39	Small nuclear ribonucleoprotein.	NTP_transf_9 domain-containing protein.	0.695
A1O7_01729	A1O7_08704	W9WBT6	W9WB47	Small nuclear ribonucleoprotein.	Nudix hydrolase domain-containing protein.	0.695
A1O7_01729	A1O7_08978	W9WBT6	W9VK29	Small nuclear ribonucleoprotein.	PAT1 domain-containing protein.	0.999
A1O7_01729	A1O7_10112	W9WBT6	W9VRI4	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.968
A1O7_01729	LSM1	W9WBT6	W9VGZ3	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.968
A1O7_01729	LSM3	W9WBT6	W9WAZ9	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O7_01729	LSM4	W9WBT6	W9VG97	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O7_02412	A1O7_04601	W9WAG8	W9VXQ9	Cellular nucleic acid-binding protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.509
A1O7_02412	LSM4	W9WAG8	W9VG97	Cellular nucleic acid-binding protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.414
A1O7_03317	A1O7_01729	W9WD09	W9WBT6	Uncharacterized protein.	Small nuclear ribonucleoprotein.	0.747
A1O7_03317	A1O7_03360	W9WD09	W9W4C0	Uncharacterized protein.	Uncharacterized protein.	0.654
A1O7_03317	A1O7_04052	W9WD09	W9W4I8	Uncharacterized protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.999
A1O7_03317	A1O7_04143	W9WD09	W9W4S7	Uncharacterized protein.	Uncharacterized protein.	0.929
A1O7_03317	A1O7_04601	W9WD09	W9VXQ9	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.999
A1O7_03317	A1O7_05017	W9WD09	W9WRA5	Uncharacterized protein.	Uncharacterized protein.	0.854