5 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_01103	Acetyl-coenzyme A synthetase. (674 aa)
	A1O7_00915	Adenine phosphoribosyltransferase. (213 aa)
	A1O7_08859	Uncharacterized protein. (403 aa)
	A1O7_03742	Uncharacterized protein; Involved in DNA replication and cell separation. Belongs to the SDS23 family. (527 aa)
	A1O7_03481	Propionyl-CoA synthetase. (697 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00915	A1O7_03742	W9W9G3	W9W4Y3	Adenine phosphoribosyltransferase.	Uncharacterized protein; Involved in DNA replication and cell separation. Belongs to the SDS23 family.	0.605
A1O7_00915	A1O7_08859	W9W9G3	W9VKA5	Adenine phosphoribosyltransferase.	Uncharacterized protein.	0.605
A1O7_01103	A1O7_03481	W9WIE0	W9WEN2	Acetyl-coenzyme A synthetase.	Propionyl-CoA synthetase.	0.798
A1O7_03481	A1O7_01103	W9WEN2	W9WIE0	Propionyl-CoA synthetase.	Acetyl-coenzyme A synthetase.	0.798
A1O7_03742	A1O7_00915	W9W4Y3	W9W9G3	Uncharacterized protein; Involved in DNA replication and cell separation. Belongs to the SDS23 family.	Adenine phosphoribosyltransferase.	0.605
A1O7_08859	A1O7_00915	W9VKA5	W9W9G3	Uncharacterized protein.	Adenine phosphoribosyltransferase.	0.605