14 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_03855	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (516 aa)
	A1O7_09479	Uncharacterized protein. (681 aa)
	A1O7_10029	Uncharacterized protein; Belongs to the cyclin family. (546 aa)
	A1O7_08939	Uncharacterized protein. (449 aa)
	A1O7_07991	DNA repair helicase rad15. (815 aa)
	A1O7_04670	CMGC/CDK/CRK7 protein kinase. (710 aa)
	A1O7_04681	DNA excision repair protein ERCC-3. (848 aa)
	A1O7_03257	CMGC/CDK protein kinase. (634 aa)
	A1O7_09411	Uncharacterized protein. (634 aa)
	A1O7_04859	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (493 aa)
	A1O7_01472	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (422 aa)
	A1O7_02815	CYCLIN domain-containing protein; Belongs to the cyclin family. (402 aa)
	A1O7_00502	CID domain-containing protein. (265 aa)
	A1O7_01786	RING-type domain-containing protein. (276 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00502	A1O7_01472	W9WHS4	W9WAI5	CID domain-containing protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.414
A1O7_00502	A1O7_03257	W9WHS4	W9W435	CID domain-containing protein.	CMGC/CDK protein kinase.	0.889
A1O7_00502	A1O7_04670	W9WHS4	W9VXE8	CID domain-containing protein.	CMGC/CDK/CRK7 protein kinase.	0.971
A1O7_00502	A1O7_09479	W9WHS4	W9VEU2	CID domain-containing protein.	Uncharacterized protein.	0.673
A1O7_00502	A1O7_10029	W9WHS4	W9VGR7	CID domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.968
A1O7_01472	A1O7_00502	W9WAI5	W9WHS4	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	CID domain-containing protein.	0.414
A1O7_01472	A1O7_01786	W9WAI5	W9WKC7	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.999
A1O7_01472	A1O7_02815	W9WAI5	W9WCV7	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.999
A1O7_01472	A1O7_03257	W9WAI5	W9W435	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	CMGC/CDK protein kinase.	0.888
A1O7_01472	A1O7_03855	W9WAI5	W9WMN6	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.977
A1O7_01472	A1O7_04670	W9WAI5	W9VXE8	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	CMGC/CDK/CRK7 protein kinase.	0.833
A1O7_01472	A1O7_04681	W9WAI5	W9VXY7	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	DNA excision repair protein ERCC-3.	0.981
A1O7_01472	A1O7_04859	W9WAI5	W9W848	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.988
A1O7_01472	A1O7_07991	W9WAI5	W9VPI0	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	DNA repair helicase rad15.	0.993
A1O7_01472	A1O7_08939	W9WAI5	W9VKI3	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.997
A1O7_01472	A1O7_09411	W9WAI5	W9W689	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.981
A1O7_01472	A1O7_09479	W9WAI5	W9VEU2	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.719
A1O7_01472	A1O7_10029	W9WAI5	W9VGR7	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the cyclin family.	0.763
A1O7_01786	A1O7_01472	W9WKC7	W9WAI5	RING-type domain-containing protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.999
A1O7_01786	A1O7_02815	W9WKC7	W9WCV7	RING-type domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.999