28 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_07202	Uncharacterized protein; Belongs to the cyclin family. (526 aa)
	A1O7_09442	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (584 aa)
	A1O7_06842	Uncharacterized protein. (449 aa)
	A1O7_08587	Transcription elongation factor B, polypeptide 1; Belongs to the SKP1 family. (104 aa)
	A1O7_10029	Uncharacterized protein; Belongs to the cyclin family. (546 aa)
	A1O7_09479	Uncharacterized protein. (681 aa)
	A1O7_06384	FAD_binding_3 domain-containing protein. (599 aa)
	A1O7_03109	Uncharacterized protein. (1239 aa)
	A1O7_01502	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1095 aa)
	A1O7_00853	Uncharacterized protein. (472 aa)
	A1O7_09839	SGNH_hydro domain-containing protein. (261 aa)
	A1O7_05480	Uncharacterized protein. (548 aa)
	A1O7_04114	Altered inheritance of mitochondria protein 24, mitochondrial. (404 aa)
	A1O7_03483	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (136 aa)
	A1O7_03257	CMGC/CDK protein kinase. (634 aa)
	A1O7_07579	Uncharacterized protein. (611 aa)
	A1O7_02888	FAD_binding_3 domain-containing protein. (607 aa)
	A1O7_03549	CFEM domain-containing protein. (283 aa)
	A1O7_03981	Plus3 domain-containing protein. (625 aa)
	A1O7_00502	CID domain-containing protein. (265 aa)
	A1O7_07561	Transcription elongation factor S-II. (304 aa)
	A1O7_05871	CDC73_C domain-containing protein. (444 aa)
	A1O7_02121	FAD_binding_3 domain-containing protein. (621 aa)
	A1O7_05977	WD_REPEATS_REGION domain-containing protein. (321 aa)
	A1O7_04815	Xaa-Pro aminopeptidase. (1028 aa)
	A1O7_07350	TPT domain-containing protein. (385 aa)
	A1O7_04670	CMGC/CDK/CRK7 protein kinase. (710 aa)
	A1O7_07309	FAD_binding_3 domain-containing protein. (452 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00502	A1O7_00853	W9WHS4	W9W8R7	CID domain-containing protein.	Uncharacterized protein.	0.421
A1O7_00502	A1O7_01502	W9WHS4	W9WAL9	CID domain-containing protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.571
A1O7_00502	A1O7_03257	W9WHS4	W9W435	CID domain-containing protein.	CMGC/CDK protein kinase.	0.889
A1O7_00502	A1O7_04670	W9WHS4	W9VXE8	CID domain-containing protein.	CMGC/CDK/CRK7 protein kinase.	0.971
A1O7_00502	A1O7_04815	W9WHS4	W9VXU5	CID domain-containing protein.	Xaa-Pro aminopeptidase.	0.437
A1O7_00502	A1O7_07202	W9WHS4	W9VMW2	CID domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.770
A1O7_00502	A1O7_09442	W9WHS4	W9VM78	CID domain-containing protein.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.479
A1O7_00502	A1O7_09479	W9WHS4	W9VEU2	CID domain-containing protein.	Uncharacterized protein.	0.673
A1O7_00502	A1O7_10029	W9WHS4	W9VGR7	CID domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.968
A1O7_00853	A1O7_00502	W9W8R7	W9WHS4	Uncharacterized protein.	CID domain-containing protein.	0.421
A1O7_00853	A1O7_01502	W9W8R7	W9WAL9	Uncharacterized protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.937
A1O7_00853	A1O7_03109	W9W8R7	W9WDN2	Uncharacterized protein.	Uncharacterized protein.	0.999
A1O7_00853	A1O7_03257	W9W8R7	W9W435	Uncharacterized protein.	CMGC/CDK protein kinase.	0.729
A1O7_00853	A1O7_03483	W9W8R7	W9W507	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.808
A1O7_00853	A1O7_03549	W9W8R7	W9WXW1	Uncharacterized protein.	CFEM domain-containing protein.	0.883
A1O7_00853	A1O7_03981	W9W8R7	W9WN61	Uncharacterized protein.	Plus3 domain-containing protein.	0.996
A1O7_00853	A1O7_04670	W9W8R7	W9VXE8	Uncharacterized protein.	CMGC/CDK/CRK7 protein kinase.	0.582
A1O7_00853	A1O7_04815	W9W8R7	W9VXU5	Uncharacterized protein.	Xaa-Pro aminopeptidase.	0.992
A1O7_00853	A1O7_05480	W9W8R7	W9VQQ0	Uncharacterized protein.	Uncharacterized protein.	0.993
A1O7_00853	A1O7_05871	W9W8R7	W9W1R4	Uncharacterized protein.	CDC73_C domain-containing protein.	0.999