40 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (205 aa)
	A1O7_10119	NUC173 domain-containing protein. (1276 aa)
	A1O7_08436	Uncharacterized protein. (585 aa)
	A1O7_08541	Uncharacterized protein. (357 aa)
	A1O7_08978	PAT1 domain-containing protein. (819 aa)
	A1O7_07351	RRF domain-containing protein. (332 aa)
	A1O7_07287	NTP_transf_9 domain-containing protein. (163 aa)
	A1O7_09318	Uncharacterized protein. (856 aa)
	A1O7_07946	SurE domain-containing protein. (752 aa)
	A1O7_10112	Uncharacterized protein. (245 aa)
	A1O7_06373	HTH La-type RNA-binding domain-containing protein. (1184 aa)
	A1O7_08731	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (774 aa)
	A1O7_08892	Uncharacterized protein. (481 aa)
	A1O7_10109	Protein vts1. (614 aa)
	A1O7_04535	Uncharacterized protein. (1288 aa)
	A1O7_06067	RNB domain-containing protein. (1353 aa)
	A1O7_06633	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. (393 aa)
	A1O7_04052	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (513 aa)
	A1O7_03502	Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (190 aa)
	A1O7_04143	Uncharacterized protein. (254 aa)
	A1O7_03675	Translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (149 aa)
	A1O7_05113	PUM-HD domain-containing protein. (734 aa)
	A1O7_10030	Uncharacterized protein. (516 aa)
	A1O7_01216	WW domain-containing protein. (1191 aa)
	A1O7_02412	Cellular nucleic acid-binding protein. (229 aa)
	A1O7_08618	Uncharacterized protein. (717 aa)
	A1O7_08704	Nudix hydrolase domain-containing protein. (889 aa)
	A1O7_08885	Peptidyl-prolyl cis-trans isomerase-like 2. (556 aa)
	A1O7_08895	Uncharacterized protein. (688 aa)
	A1O7_03058	Serine/threonine protein kinase. (623 aa)
	A1O7_03317	Uncharacterized protein. (339 aa)
	A1O7_03672	Uncharacterized protein. (709 aa)
	A1O7_00020	Uncharacterized protein. (368 aa)
	A1O7_00841	Uncharacterized protein. (486 aa)
	A1O7_05477	RRM domain-containing protein. (368 aa)
	A1O7_01003	AD domain-containing protein. (253 aa)
	A1O7_01289	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (405 aa)
	A1O7_06410	LsmAD domain-containing protein. (1065 aa)
	A1O7_05212	Uncharacterized protein. (1454 aa)
	CLU1	Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. (1325 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00020	A1O7_04052	W9WFB4	W9W4I8	Uncharacterized protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.496
A1O7_00020	A1O7_05477	W9WFB4	W9WHS5	Uncharacterized protein.	RRM domain-containing protein.	0.546
A1O7_00020	A1O7_08731	W9WFB4	W9VUE8	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.448
A1O7_00020	A1O7_08892	W9WFB4	W9VUX9	Uncharacterized protein.	Uncharacterized protein.	0.584
A1O7_00020	A1O7_09318	W9WFB4	W9VPB8	Uncharacterized protein.	Uncharacterized protein.	0.580
A1O7_00020	A1O7_10030	W9WFB4	W9W815	Uncharacterized protein.	Uncharacterized protein.	0.547
A1O7_00841	A1O7_04052	W9WHQ1	W9W4I8	Uncharacterized protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.496
A1O7_00841	A1O7_05477	W9WHQ1	W9WHS5	Uncharacterized protein.	RRM domain-containing protein.	0.546
A1O7_00841	A1O7_08731	W9WHQ1	W9VUE8	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.448
A1O7_00841	A1O7_08892	W9WHQ1	W9VUX9	Uncharacterized protein.	Uncharacterized protein.	0.584
A1O7_00841	A1O7_09318	W9WHQ1	W9VPB8	Uncharacterized protein.	Uncharacterized protein.	0.580
A1O7_00841	A1O7_10030	W9WHQ1	W9W815	Uncharacterized protein.	Uncharacterized protein.	0.547
A1O7_01003	A1O7_04052	W9WI52	W9W4I8	AD domain-containing protein.	ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family.	0.909
A1O7_01003	A1O7_05113	W9WI52	W9W7J3	AD domain-containing protein.	PUM-HD domain-containing protein.	0.591
A1O7_01003	A1O7_06410	W9WI52	W9WKJ4	AD domain-containing protein.	LsmAD domain-containing protein.	0.997
A1O7_01003	A1O7_08541	W9WI52	W9VJD8	AD domain-containing protein.	Uncharacterized protein.	0.440
A1O7_01003	A1O7_08731	W9WI52	W9VUE8	AD domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.576
A1O7_01003	A1O7_10112	W9WI52	W9VRI4	AD domain-containing protein.	Uncharacterized protein.	0.471
A1O7_01003	LSM1	W9WI52	W9VGZ3	AD domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.471
A1O7_01289	A1O7_03675	W9WJ08	W9W5I7	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.616