(6 nodes) ATP-grasp fold, subdomain 1 network (Cladophialophora yegresii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_00201	Acetyl-CoA carboxylase. (2285 aa)
	A1O7_07331	Carbamoyl-phosphate synthase arginine-specific large chain. (1164 aa)
	A1O7_09252	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily. (610 aa)
	A1O7_08791	Protein pyrABCN. (2303 aa)
	A1O7_05621	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (445 aa)
	A1O7_03524	ATP-grasp domain-containing protein. (797 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00201	A1O7_03524	W9WH07	W9WXT3	Acetyl-CoA carboxylase.	ATP-grasp domain-containing protein.	0.790
A1O7_00201	A1O7_05621	W9WH07	W9W107	Acetyl-CoA carboxylase.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.843
A1O7_00201	A1O7_07331	W9WH07	W9VMR4	Acetyl-CoA carboxylase.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.703
A1O7_00201	A1O7_08791	W9WH07	W9VSA6	Acetyl-CoA carboxylase.	Protein pyrABCN.	0.703
A1O7_00201	A1O7_09252	W9WH07	W9VP76	Acetyl-CoA carboxylase.	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	0.650
A1O7_03524	A1O7_00201	W9WXT3	W9WH07	ATP-grasp domain-containing protein.	Acetyl-CoA carboxylase.	0.790
A1O7_03524	A1O7_07331	W9WXT3	W9VMR4	ATP-grasp domain-containing protein.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.799
A1O7_03524	A1O7_08791	W9WXT3	W9VSA6	ATP-grasp domain-containing protein.	Protein pyrABCN.	0.799
A1O7_03524	A1O7_09252	W9WXT3	W9VP76	ATP-grasp domain-containing protein.	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	0.999
A1O7_05621	A1O7_00201	W9W107	W9WH07	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	Acetyl-CoA carboxylase.	0.843
A1O7_07331	A1O7_00201	W9VMR4	W9WH07	Carbamoyl-phosphate synthase arginine-specific large chain.	Acetyl-CoA carboxylase.	0.703
A1O7_07331	A1O7_03524	W9VMR4	W9WXT3	Carbamoyl-phosphate synthase arginine-specific large chain.	ATP-grasp domain-containing protein.	0.799
A1O7_07331	A1O7_08791	W9VMR4	W9VSA6	Carbamoyl-phosphate synthase arginine-specific large chain.	Protein pyrABCN.	0.847
A1O7_08791	A1O7_00201	W9VSA6	W9WH07	Protein pyrABCN.	Acetyl-CoA carboxylase.	0.703
A1O7_08791	A1O7_03524	W9VSA6	W9WXT3	Protein pyrABCN.	ATP-grasp domain-containing protein.	0.799
A1O7_08791	A1O7_07331	W9VSA6	W9VMR4	Protein pyrABCN.	Carbamoyl-phosphate synthase arginine-specific large chain.	0.847
A1O7_09252	A1O7_00201	W9VP76	W9WH07	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	Acetyl-CoA carboxylase.	0.650
A1O7_09252	A1O7_03524	W9VP76	W9WXT3	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	ATP-grasp domain-containing protein.	0.999