32 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_08939	Uncharacterized protein. (449 aa)
	A1O7_07051	DNA-directed RNA polymerase I, II, and III subunit RPABC2. (157 aa)
	A1O7_07589	Uncharacterized protein. (557 aa)
	A1O7_07590	S1 domain-containing protein. (167 aa)
	A1O7_09328	Uncharacterized protein. (87 aa)
	A1O7_07991	DNA repair helicase rad15. (815 aa)
	A1O7_09892	Uncharacterized protein. (691 aa)
	A1O7_06040	Uncharacterized protein. (66 aa)
	A1O7_06298	Uncharacterized protein. (457 aa)
	A1O7_04450	Uncharacterized protein. (78 aa)
	A1O7_04681	DNA excision repair protein ERCC-3. (848 aa)
	A1O7_02005	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1266 aa)
	A1O7_02010	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1760 aa)
	A1O7_02501	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (73 aa)
	A1O7_03216	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (118 aa)
	A1O7_03997	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (850 aa)
	A1O7_09411	Uncharacterized protein. (634 aa)
	A1O7_09834	Nuclear cap-binding protein subunit 2. (177 aa)
	A1O7_04859	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (493 aa)
	A1O7_01472	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (422 aa)
	A1O7_01502	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1095 aa)
	A1O7_08734	DNA-directed RNA polymerase II subunit RPB3. (334 aa)
	A1O7_08770	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A1O7_03148	Uncharacterized protein. (848 aa)
	A1O7_02815	CYCLIN domain-containing protein; Belongs to the cyclin family. (402 aa)
	A1O7_07093	RPOL4c domain-containing protein. (152 aa)
	A1O7_07812	DNA-directed RNA polymerase I, II, and III subunit RPABC1. (238 aa)
	A1O7_01235	RNA_pol_L_2 domain-containing protein. (271 aa)
	A1O7_06249	Uncharacterized protein. (387 aa)
	A1O7_01786	RING-type domain-containing protein. (276 aa)
	A1O7_03855	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (516 aa)
	A1O7_03549	CFEM domain-containing protein. (283 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_01235	A1O7_01472	W9WJX5	W9WAI5	RNA_pol_L_2 domain-containing protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.875
A1O7_01235	A1O7_01502	W9WJX5	W9WAL9	RNA_pol_L_2 domain-containing protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.994
A1O7_01235	A1O7_01786	W9WJX5	W9WKC7	RNA_pol_L_2 domain-containing protein.	RING-type domain-containing protein.	0.965
A1O7_01235	A1O7_02005	W9WJX5	W9W0G2	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A1O7_01235	A1O7_02010	W9WJX5	W9W0G9	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A1O7_01235	A1O7_02501	W9WJX5	W9W293	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.999
A1O7_01235	A1O7_02815	W9WJX5	W9WCV7	RNA_pol_L_2 domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.917
A1O7_01235	A1O7_03216	W9WJX5	W9W3Z8	RNA_pol_L_2 domain-containing protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.990
A1O7_01235	A1O7_03549	W9WJX5	W9WXW1	RNA_pol_L_2 domain-containing protein.	CFEM domain-containing protein.	0.948
A1O7_01235	A1O7_03855	W9WJX5	W9WMN6	RNA_pol_L_2 domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.967
A1O7_01235	A1O7_03997	W9WJX5	W9W4E3	RNA_pol_L_2 domain-containing protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.925
A1O7_01235	A1O7_04450	W9WJX5	W9VX80	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.863
A1O7_01235	A1O7_04681	W9WJX5	W9VXY7	RNA_pol_L_2 domain-containing protein.	DNA excision repair protein ERCC-3.	0.966
A1O7_01235	A1O7_04859	W9WJX5	W9W848	RNA_pol_L_2 domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.972
A1O7_01235	A1O7_06040	W9WJX5	W9VSS7	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.999
A1O7_01235	A1O7_06249	W9WJX5	W9WK10	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.984
A1O7_01235	A1O7_07051	W9WJX5	W9VLX8	RNA_pol_L_2 domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC2.	0.999
A1O7_01235	A1O7_07093	W9WJX5	W9WDZ6	RNA_pol_L_2 domain-containing protein.	RPOL4c domain-containing protein.	0.999
A1O7_01235	A1O7_07589	W9WJX5	W9VNF1	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.980
A1O7_01235	A1O7_07590	W9WJX5	W9VNX0	RNA_pol_L_2 domain-containing protein.	S1 domain-containing protein.	0.999