41 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_03216	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (118 aa)
	A1O7_02501	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (73 aa)
	A1O7_02010	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1760 aa)
	A1O7_02005	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1266 aa)
	A1O7_04681	DNA excision repair protein ERCC-3. (848 aa)
	A1O7_04815	Xaa-Pro aminopeptidase. (1028 aa)
	A1O7_04670	CMGC/CDK/CRK7 protein kinase. (710 aa)
	A1O7_04450	Uncharacterized protein. (78 aa)
	A1O7_06298	Uncharacterized protein. (457 aa)
	A1O7_06040	Uncharacterized protein. (66 aa)
	A1O7_09892	Uncharacterized protein. (691 aa)
	A1O7_07991	DNA repair helicase rad15. (815 aa)
	A1O7_09328	Uncharacterized protein. (87 aa)
	A1O7_07561	Transcription elongation factor S-II. (304 aa)
	A1O7_07812	DNA-directed RNA polymerase I, II, and III subunit RPABC1. (238 aa)
	A1O7_01235	RNA_pol_L_2 domain-containing protein. (271 aa)
	A1O7_06249	Uncharacterized protein. (387 aa)
	A1O7_01786	RING-type domain-containing protein. (276 aa)
	A1O7_03855	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (516 aa)
	A1O7_03549	CFEM domain-containing protein. (283 aa)
	A1O7_03257	CMGC/CDK protein kinase. (634 aa)
	A1O7_03997	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (850 aa)
	A1O7_09411	Uncharacterized protein. (634 aa)
	A1O7_04859	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (493 aa)
	A1O7_00479	Uncharacterized protein. (847 aa)
	A1O7_01472	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (422 aa)
	A1O7_01502	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1095 aa)
	A1O7_08734	DNA-directed RNA polymerase II subunit RPB3. (334 aa)
	A1O7_08770	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A1O7_02815	CYCLIN domain-containing protein; Belongs to the cyclin family. (402 aa)
	A1O7_07093	RPOL4c domain-containing protein. (152 aa)
	A1O7_08939	Uncharacterized protein. (449 aa)
	A1O7_08587	Transcription elongation factor B, polypeptide 1; Belongs to the SKP1 family. (104 aa)
	A1O7_10029	Uncharacterized protein; Belongs to the cyclin family. (546 aa)
	A1O7_09479	Uncharacterized protein. (681 aa)
	A1O7_07590	S1 domain-containing protein. (167 aa)
	A1O7_07589	Uncharacterized protein. (557 aa)
	A1O7_07202	Uncharacterized protein; Belongs to the cyclin family. (526 aa)
	A1O7_09442	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (584 aa)
	A1O7_07051	DNA-directed RNA polymerase I, II, and III subunit RPABC2. (157 aa)
	A1O7_06842	Uncharacterized protein. (449 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00479	A1O7_01235	W9W850	W9WJX5	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.811
A1O7_00479	A1O7_01472	W9W850	W9WAI5	Uncharacterized protein.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.551
A1O7_00479	A1O7_01502	W9W850	W9WAL9	Uncharacterized protein.	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.447
A1O7_00479	A1O7_02005	W9W850	W9W0G2	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.818
A1O7_00479	A1O7_02010	W9W850	W9W0G9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.925
A1O7_00479	A1O7_02501	W9W850	W9W293	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.811
A1O7_00479	A1O7_03257	W9W850	W9W435	Uncharacterized protein.	CMGC/CDK protein kinase.	0.507
A1O7_00479	A1O7_04670	W9W850	W9VXE8	Uncharacterized protein.	CMGC/CDK/CRK7 protein kinase.	0.627
A1O7_00479	A1O7_06040	W9W850	W9VSS7	Uncharacterized protein.	Uncharacterized protein.	0.811
A1O7_00479	A1O7_07051	W9W850	W9VLX8	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC2.	0.811
A1O7_00479	A1O7_07093	W9W850	W9WDZ6	Uncharacterized protein.	RPOL4c domain-containing protein.	0.811
A1O7_00479	A1O7_07202	W9W850	W9VMW2	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.513
A1O7_00479	A1O7_07561	W9W850	W9WFB6	Uncharacterized protein.	Transcription elongation factor S-II.	0.821
A1O7_00479	A1O7_07589	W9W850	W9VNF1	Uncharacterized protein.	Uncharacterized protein.	0.748
A1O7_00479	A1O7_07590	W9W850	W9VNX0	Uncharacterized protein.	S1 domain-containing protein.	0.811
A1O7_00479	A1O7_07812	W9W850	W9WG12	Uncharacterized protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC1.	0.880
A1O7_00479	A1O7_08734	W9W850	W9WB76	Uncharacterized protein.	DNA-directed RNA polymerase II subunit RPB3.	0.839
A1O7_00479	A1O7_08770	W9W850	W9WBE5	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.811
A1O7_00479	A1O7_09328	W9W850	W9VPC5	Uncharacterized protein.	Uncharacterized protein.	0.836
A1O7_00479	A1O7_09411	W9W850	W9W689	Uncharacterized protein.	Uncharacterized protein.	0.526