34 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_02426	Epimerase domain-containing protein. (335 aa)
	A1O7_01617	Uncharacterized protein. (560 aa)
	A1O7_05422	ATP-dependent RNA helicase eIF4A; Belongs to the DEAD box helicase family. (396 aa)
	A1O7_00301	Uncharacterized protein. (67 aa)
	A1O7_00166	Epimerase domain-containing protein. (363 aa)
	A1O7_00146	Epimerase domain-containing protein. (339 aa)
	A1O7_00126	Epimerase domain-containing protein. (354 aa)
	A1O7_07489	Epimerase domain-containing protein. (335 aa)
	A1O7_03099	Epimerase domain-containing protein. (353 aa)
	A1O7_08840	Epimerase domain-containing protein. (345 aa)
	A1O7_08731	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (774 aa)
	A1O7_06769	Epimerase domain-containing protein. (340 aa)
	A1O7_07563	3Beta_HSD domain-containing protein. (348 aa)
	A1O7_05353	Dihydroflavonol-4-reductase. (327 aa)
	A1O7_05443	Uncharacterized protein. (322 aa)
	A1O7_02025	Uncharacterized protein. (63 aa)
	A1O7_05479	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (480 aa)
	A1O7_02066	Uncharacterized protein. (542 aa)
	A1O7_05831	Dihydroflavonol-4-reductase. (340 aa)
	A1O7_03426	Epimerase domain-containing protein. (385 aa)
	A1O7_04387	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (242 aa)
	A1O7_08089	Uncharacterized protein. (432 aa)
	A1O7_01337	Translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (226 aa)
	A1O7_02739	Semialdhyde_dh domain-containing protein. (350 aa)
	A1O7_09194	Dihydroflavonol-4-reductase. (340 aa)
	A1O7_08033	Translation initiation factor 4G. (1535 aa)
	A1O7_08134	RRM domain-containing protein. (478 aa)
	A1O7_08799	Uncharacterized protein. (846 aa)
	A1O7_08207	Epimerase domain-containing protein. (378 aa)
	A1O7_05386	Dihydroflavonol-4-reductase. (334 aa)
	A1O7_05697	Uncharacterized protein. (394 aa)
	A1O7_05793	Uncharacterized protein. (521 aa)
	A1O7_08886	Uncharacterized protein. (309 aa)
	A1O7_00279	Epimerase domain-containing protein. (347 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00126	A1O7_01617	W9WGS8	W9WKX9	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00126	A1O7_04387	W9WGS8	W9W5F7	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.561
A1O7_00126	A1O7_05479	W9WGS8	W9W0M5	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.481
A1O7_00126	A1O7_08886	W9WGS8	W9VSH6	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00146	A1O7_01617	W9WGT9	W9WKX9	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00146	A1O7_02426	W9WGT9	W9WUL4	Epimerase domain-containing protein.	Epimerase domain-containing protein.	0.503
A1O7_00146	A1O7_04387	W9WGT9	W9W5F7	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.561
A1O7_00146	A1O7_05479	W9WGT9	W9W0M5	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.481
A1O7_00146	A1O7_08886	W9WGT9	W9VSH6	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00166	A1O7_01617	W9WGW2	W9WKX9	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00166	A1O7_04387	W9WGW2	W9W5F7	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.561
A1O7_00166	A1O7_05479	W9WGW2	W9W0M5	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.481
A1O7_00166	A1O7_08886	W9WGW2	W9VSH6	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00279	A1O7_01617	W9X0C8	W9WKX9	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00279	A1O7_04387	W9X0C8	W9W5F7	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.561
A1O7_00279	A1O7_05479	W9X0C8	W9W0M5	Epimerase domain-containing protein.	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.481
A1O7_00279	A1O7_08886	W9X0C8	W9VSH6	Epimerase domain-containing protein.	Uncharacterized protein.	0.561
A1O7_00301	A1O7_01617	W9WH84	W9WKX9	Uncharacterized protein.	Uncharacterized protein.	0.561
A1O7_00301	A1O7_04387	W9WH84	W9W5F7	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.561
A1O7_00301	A1O7_05479	W9WH84	W9W0M5	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.481