24 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (501 aa)
	A1O7_06992	Uncharacterized protein. (249 aa)
	A1O7_07166	DUF3453 domain-containing protein. (768 aa)
	A1O7_05863	Small nuclear ribonucleoprotein G. (69 aa)
	A1O7_08996	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A1O7_08172	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (291 aa)
	A1O7_03824	Uncharacterized protein. (299 aa)
	A1O7_04741	Uncharacterized protein. (602 aa)
	A1O7_05261	CID domain-containing protein. (666 aa)
	A1O7_06022	RRM domain-containing protein. (112 aa)
	A1O7_02227	Endoribonuclease ysh1. (854 aa)
	A1O7_05736	CPSF_A domain-containing protein. (1355 aa)
	A1O7_02746	Cleavage and polyadenylation specificity factor subunit 2. (951 aa)
	A1O7_03472	Suf domain-containing protein. (1026 aa)
	A1O7_09834	Nuclear cap-binding protein subunit 2. (177 aa)
	A1O7_08291	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	A1O7_08331	Fip1 domain-containing protein. (341 aa)
	A1O7_03148	Uncharacterized protein. (848 aa)
	A1O7_03275	Small nuclear ribonucleoprotein F. (93 aa)
	A1O7_00376	WD_REPEATS_REGION domain-containing protein. (672 aa)
	A1O7_04102	Uncharacterized protein. (638 aa)
	A1O7_02068	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (614 aa)
	A1O7_03274	Uncharacterized protein. (160 aa)
	A1O7_00204	RRM domain-containing protein. (296 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00204	A1O7_00376	W9X068	W9WHF0	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.980
A1O7_00204	A1O7_02068	W9X068	W9WTH8	RRM domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.980
A1O7_00204	A1O7_02227	W9X068	W9W144	RRM domain-containing protein.	Endoribonuclease ysh1.	0.990
A1O7_00204	A1O7_02746	W9X068	W9W2M3	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.989
A1O7_00204	A1O7_03148	W9X068	W9WCJ0	RRM domain-containing protein.	Uncharacterized protein.	0.875
A1O7_00204	A1O7_03274	W9X068	W9WX66	RRM domain-containing protein.	Uncharacterized protein.	0.747
A1O7_00204	A1O7_03275	W9X068	W9WCX7	RRM domain-containing protein.	Small nuclear ribonucleoprotein F.	0.747
A1O7_00204	A1O7_03472	W9X068	W9W500	RRM domain-containing protein.	Suf domain-containing protein.	0.997
A1O7_00204	A1O7_03824	W9X068	W9VVK4	RRM domain-containing protein.	Uncharacterized protein.	0.747
A1O7_00204	A1O7_05261	W9X068	W9VZK5	RRM domain-containing protein.	CID domain-containing protein.	0.990
A1O7_00204	A1O7_05736	W9X068	W9W1A8	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.990
A1O7_00204	A1O7_05863	W9X068	W9VSB3	RRM domain-containing protein.	Small nuclear ribonucleoprotein G.	0.864
A1O7_00204	A1O7_06022	W9X068	W9W0U7	RRM domain-containing protein.	RRM domain-containing protein.	0.897
A1O7_00204	A1O7_06992	W9X068	W9VMA0	RRM domain-containing protein.	Uncharacterized protein.	0.986
A1O7_00204	A1O7_07166	W9X068	W9VMA2	RRM domain-containing protein.	DUF3453 domain-containing protein.	0.989
A1O7_00204	A1O7_08172	W9X068	W9VSU0	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.860
A1O7_00204	A1O7_08291	W9X068	W9W9Z3	RRM domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.884
A1O7_00204	A1O7_08331	W9X068	W9WA23	RRM domain-containing protein.	Fip1 domain-containing protein.	0.982
A1O7_00204	A1O7_08996	W9X068	W9VSS5	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.876
A1O7_00204	A1O7_09834	W9X068	W9W7F7	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.875