18 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	A1O7_00204	RRM domain-containing protein. (296 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (501 aa)
	A1O7_06992	Uncharacterized protein. (249 aa)
	A1O7_07166	DUF3453 domain-containing protein. (768 aa)
	A1O7_08172	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (291 aa)
	A1O7_04741	Uncharacterized protein. (602 aa)
	A1O7_05261	CID domain-containing protein. (666 aa)
	A1O7_06022	RRM domain-containing protein. (112 aa)
	A1O7_02227	Endoribonuclease ysh1. (854 aa)
	A1O7_05736	CPSF_A domain-containing protein. (1355 aa)
	A1O7_02746	Cleavage and polyadenylation specificity factor subunit 2. (951 aa)
	A1O7_03472	Suf domain-containing protein. (1026 aa)
	A1O7_09834	Nuclear cap-binding protein subunit 2. (177 aa)
	A1O7_08331	Fip1 domain-containing protein. (341 aa)
	A1O7_03148	Uncharacterized protein. (848 aa)
	A1O7_00376	WD_REPEATS_REGION domain-containing protein. (672 aa)
	A1O7_04102	Uncharacterized protein. (638 aa)
	A1O7_02068	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (614 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00204	A1O7_00376	W9X068	W9WHF0	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.980
A1O7_00204	A1O7_02068	W9X068	W9WTH8	RRM domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.980
A1O7_00204	A1O7_02227	W9X068	W9W144	RRM domain-containing protein.	Endoribonuclease ysh1.	0.990
A1O7_00204	A1O7_02746	W9X068	W9W2M3	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.989
A1O7_00204	A1O7_03148	W9X068	W9WCJ0	RRM domain-containing protein.	Uncharacterized protein.	0.875
A1O7_00204	A1O7_03472	W9X068	W9W500	RRM domain-containing protein.	Suf domain-containing protein.	0.997
A1O7_00204	A1O7_05261	W9X068	W9VZK5	RRM domain-containing protein.	CID domain-containing protein.	0.990
A1O7_00204	A1O7_05736	W9X068	W9W1A8	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.990
A1O7_00204	A1O7_06022	W9X068	W9W0U7	RRM domain-containing protein.	RRM domain-containing protein.	0.897
A1O7_00204	A1O7_06992	W9X068	W9VMA0	RRM domain-containing protein.	Uncharacterized protein.	0.986
A1O7_00204	A1O7_07166	W9X068	W9VMA2	RRM domain-containing protein.	DUF3453 domain-containing protein.	0.989
A1O7_00204	A1O7_08172	W9X068	W9VSU0	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.860
A1O7_00204	A1O7_08331	W9X068	W9WA23	RRM domain-containing protein.	Fip1 domain-containing protein.	0.982
A1O7_00204	A1O7_09834	W9X068	W9W7F7	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.875
A1O7_00204	CLP1	W9X068	W9VI73	RRM domain-containing protein.	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	0.990
A1O7_00376	A1O7_00204	W9WHF0	W9X068	WD_REPEATS_REGION domain-containing protein.	RRM domain-containing protein.	0.980
A1O7_00376	A1O7_02068	W9WHF0	W9WTH8	WD_REPEATS_REGION domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.989
A1O7_00376	A1O7_02227	W9WHF0	W9W144	WD_REPEATS_REGION domain-containing protein.	Endoribonuclease ysh1.	0.999
A1O7_00376	A1O7_02746	W9WHF0	W9W2M3	WD_REPEATS_REGION domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
A1O7_00376	A1O7_03148	W9WHF0	W9WCJ0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.668