43 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_07202	Uncharacterized protein; Belongs to the cyclin family. (526 aa)
	A1O7_00725	Uncharacterized protein. (756 aa)
	A1O7_04561	Uncharacterized protein. (827 aa)
	A1O7_04016	Histone H2B; Belongs to the histone H2B family. (141 aa)
	A1O7_06249	Uncharacterized protein. (387 aa)
	A1O7_01235	RNA_pol_L_2 domain-containing protein. (271 aa)
	A1O7_05679	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family. (536 aa)
	A1O7_00522	BTB domain-containing protein. (965 aa)
	A1O7_07812	DNA-directed RNA polymerase I, II, and III subunit RPABC1. (238 aa)
	A1O7_07711	TATA-box-binding protein. (265 aa)
	A1O7_03287	GATA-type domain-containing protein. (943 aa)
	A1O7_07093	RPOL4c domain-containing protein. (152 aa)
	A1O7_03215	Serine/threonine-protein phosphatase. (482 aa)
	A1O7_07008	Heat shock protein 90. (702 aa)
	A1O7_02311	Histone acetyltransferase GCN5. (369 aa)
	A1O7_08770	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A1O7_02759	Uncharacterized protein. (397 aa)
	A1O7_02266	Uncharacterized protein. (375 aa)
	A1O7_08744	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (548 aa)
	A1O7_08734	DNA-directed RNA polymerase II subunit RPB3. (334 aa)
	A1O7_03498	Fork-head domain-containing protein. (723 aa)
	A1O7_03257	CMGC/CDK protein kinase. (634 aa)
	A1O7_02501	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (73 aa)
	A1O7_01961	HET domain-containing protein. (562 aa)
	A1O7_02010	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1760 aa)
	A1O7_02005	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1266 aa)
	A1O7_06930	Lysine-specific histone demethylase 1. (992 aa)
	A1O7_08223	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	A1O7_06040	Uncharacterized protein. (66 aa)
	A1O7_08402	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1157 aa)
	A1O7_09892	Uncharacterized protein. (691 aa)
	A1O7_08222	Uncharacterized protein. (279 aa)
	cprA	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Involved in ergosterol biosynthesis. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (691 aa)
	A1O7_07956	Protein arginine N-methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (368 aa)
	A1O7_07941	AGC/PDK1 protein kinase. (871 aa)
	A1O7_09328	Uncharacterized protein. (87 aa)
	A1O7_07590	S1 domain-containing protein. (167 aa)
	A1O7_07589	Uncharacterized protein. (557 aa)
	A1O7_07051	DNA-directed RNA polymerase I, II, and III subunit RPABC2. (157 aa)
	A1O7_06921	Flavin_Reduct domain-containing protein. (211 aa)
	A1O7_10029	Uncharacterized protein; Belongs to the cyclin family. (546 aa)
	A1O7_09620	Uncharacterized protein. (384 aa)
	A1O7_09405	GATA-binding protein, other eukaryote. (257 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00522	A1O7_01235	W9WHU6	W9WJX5	BTB domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.916
A1O7_00522	A1O7_02005	W9WHU6	W9W0G2	BTB domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.937
A1O7_00522	A1O7_02010	W9WHU6	W9W0G9	BTB domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.693
A1O7_00522	A1O7_02266	W9WHU6	W9WBC3	BTB domain-containing protein.	Uncharacterized protein.	0.960
A1O7_00522	A1O7_02311	W9WHU6	W9WBF3	BTB domain-containing protein.	Histone acetyltransferase GCN5.	0.843
A1O7_00522	A1O7_02501	W9WHU6	W9W293	BTB domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.941
A1O7_00522	A1O7_02759	W9WHU6	W9WBE4	BTB domain-containing protein.	Uncharacterized protein.	0.843
A1O7_00522	A1O7_03287	W9WHU6	W9WE78	BTB domain-containing protein.	GATA-type domain-containing protein.	0.586
A1O7_00522	A1O7_04016	W9WHU6	W9WN96	BTB domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.730
A1O7_00522	A1O7_05679	W9WHU6	W9WIC2	BTB domain-containing protein.	ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.	0.685
A1O7_00522	A1O7_06040	W9WHU6	W9VSS7	BTB domain-containing protein.	Uncharacterized protein.	0.927
A1O7_00522	A1O7_06249	W9WHU6	W9WK10	BTB domain-containing protein.	Uncharacterized protein.	0.955
A1O7_00522	A1O7_07051	W9WHU6	W9VLX8	BTB domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC2.	0.936
A1O7_00522	A1O7_07093	W9WHU6	W9WDZ6	BTB domain-containing protein.	RPOL4c domain-containing protein.	0.929
A1O7_00522	A1O7_07202	W9WHU6	W9VMW2	BTB domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.635
A1O7_00522	A1O7_07589	W9WHU6	W9VNF1	BTB domain-containing protein.	Uncharacterized protein.	0.898
A1O7_00522	A1O7_07590	W9WHU6	W9VNX0	BTB domain-containing protein.	S1 domain-containing protein.	0.898
A1O7_00522	A1O7_07812	W9WHU6	W9WG12	BTB domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC1.	0.954
A1O7_00522	A1O7_08222	W9WHU6	W9VQJ7	BTB domain-containing protein.	Uncharacterized protein.	0.923
A1O7_00522	A1O7_08223	W9WHU6	W9VSY7	BTB domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.923