103 items (Cladophialophora yegresii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O7_09821	Uncharacterized protein. (667 aa)
	A1O7_03856	Zn(2)-C6 fungal-type domain-containing protein. (440 aa)
	A1O7_03472	Suf domain-containing protein. (1026 aa)
	A1O7_03767	Zn(2)-C6 fungal-type domain-containing protein. (728 aa)
	A1O7_04246	eIF2A domain-containing protein. (759 aa)
	A1O7_03618	GAR domain-containing protein. (1039 aa)
	A1O7_03638	Eukaryotic peptide chain release factor subunit 1. (434 aa)
	A1O7_04337	Uncharacterized protein. (517 aa)
	A1O7_04119	TYR_PHOSPHATASE_2 domain-containing protein. (674 aa)
	A1O7_04180	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (413 aa)
	A1O7_00052	Protein phosphatase 2 (Formerly 2A), regulatory subunit A. (625 aa)
	A1O7_04503	Uncharacterized protein. (599 aa)
	A1O7_09804	ATP-dependent RNA helicase DBP5; Belongs to the DEAD box helicase family. (508 aa)
	A1O7_09834	Nuclear cap-binding protein subunit 2. (177 aa)
	A1O7_05278	Regulator-nonsense transcripts 1. (1080 aa)
	A1O7_00544	Pinin_SDK_memA domain-containing protein. (357 aa)
	A1O7_00584	RNA-dependent RNA polymerase. (1422 aa)
	A1O7_08331	Fip1 domain-containing protein. (341 aa)
	A1O7_02290	Uncharacterized protein. (878 aa)
	A1O7_02315	Uncharacterized protein. (488 aa)
	A1O7_01964	Uncharacterized protein. (322 aa)
	A1O7_01583	Uncharacterized protein. (617 aa)
	A1O7_03003	ATP-dependent RNA helicase sub2. (440 aa)
	A1O7_03148	Uncharacterized protein. (848 aa)
	A1O7_06742	Nucleolin. (512 aa)
	A1O7_01328	Uncharacterized protein. (465 aa)
	A1O7_00204	RRM domain-containing protein. (296 aa)
	A1O7_03574	RRM domain-containing protein. (261 aa)
	A1O7_03776	Uncharacterized protein. (670 aa)
	A1O7_03706	DUF676 domain-containing protein. (1313 aa)
	A1O7_03045	Uncharacterized protein. (812 aa)
	A1O7_02746	Cleavage and polyadenylation specificity factor subunit 2. (951 aa)
	A1O7_02621	Uncharacterized protein. (189 aa)
	A1O7_06171	RNA-dependent RNA polymerase. (932 aa)
	A1O7_02576	C2H2-type domain-containing protein. (690 aa)
	A1O7_02670	Uncharacterized protein. (412 aa)
	A1O7_05866	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (477 aa)
	A1O7_02298	Uncharacterized protein. (1399 aa)
	A1O7_05736	CPSF_A domain-containing protein. (1355 aa)
	A1O7_02227	Endoribonuclease ysh1. (854 aa)
	A1O7_06022	RRM domain-containing protein. (112 aa)
	A1O7_05261	CID domain-containing protein. (666 aa)
	A1O7_07784	Uncharacterized protein. (606 aa)
	A1O7_07628	Uncharacterized protein. (368 aa)
	A1O7_04741	Uncharacterized protein. (602 aa)
	A1O7_04610	Uncharacterized protein. (919 aa)
	A1O7_07105	DRMBL domain-containing protein. (922 aa)
	A1O7_07562	Cytochrome b5 heme-binding domain-containing protein. (637 aa)
	A1O7_07537	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)
	A1O7_07005	TAP-C domain-containing protein. (442 aa)
	A1O7_03843	Uncharacterized protein. (365 aa)
	A1O7_03327	RRM domain-containing protein. (359 aa)
	A1O7_03119	DUF2439 domain-containing protein. (759 aa)
	A1O7_03169	FAD_binding_2 domain-containing protein. (520 aa)
	A1O7_03415	PWI domain-containing protein. (124 aa)
	A1O7_00160	Uncharacterized protein. (524 aa)
	A1O7_00206	Tr-type G domain-containing protein. (697 aa)
	A1O7_00376	WD_REPEATS_REGION domain-containing protein. (672 aa)
	A1O7_00542	Uncharacterized protein. (351 aa)
	A1O7_01379	Glyco_hydro_79C domain-containing protein. (625 aa)
	A1O7_06066	Uncharacterized protein. (560 aa)
	A1O7_01535	Serine/threonine-protein phosphatase. (551 aa)
	A1O7_06239	Uncharacterized protein. (434 aa)
	A1O7_01886	Uncharacterized protein. (128 aa)
	A1O7_03765	Glyco_hydro_79C domain-containing protein. (537 aa)
	A1O7_04102	Uncharacterized protein. (638 aa)
	A1O7_05027	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (718 aa)
	A1O7_02068	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (614 aa)
	A1O7_02118	Uncharacterized protein. (250 aa)
	A1O7_02733	SAP domain-containing protein. (694 aa)
	A1O7_03372	Uncharacterized protein. (730 aa)
	A1O7_03413	Uncharacterized protein. (107 aa)
	A1O7_08787	FoP_duplication domain-containing protein. (123 aa)
	A1O7_08731	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (774 aa)
	A1O7_06424	Protein mago nashi. (157 aa)
	A1O7_06203	RRM domain-containing protein. (291 aa)
	A1O7_09101	FAD_binding_2 domain-containing protein. (551 aa)
	A1O7_08172	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (291 aa)
	A1O7_06202	Glyco_hydro_79C domain-containing protein. (532 aa)
	A1O7_08786	Uncharacterized protein. (87 aa)
	A1O7_10162	Uncharacterized protein. (1197 aa)
	A1O7_05542	Uncharacterized protein. (655 aa)
	A1O7_08483	RRM domain-containing protein. (708 aa)
	A1O7_09780	Uncharacterized protein. (714 aa)
	A1O7_09669	Elongation factor 1-alpha. (759 aa)
	A1O7_09588	Uncharacterized protein. (562 aa)
	A1O7_07322	Goodbye domain-containing protein. (1485 aa)
	A1O7_07252	FAD_binding_2 domain-containing protein. (272 aa)
	A1O7_09694	ATP-dependent RNA helicase fal1; Belongs to the DEAD box helicase family. (399 aa)
	A1O7_07166	DUF3453 domain-containing protein. (768 aa)
	A1O7_06992	Uncharacterized protein. (249 aa)
	A1O7_06981	Uncharacterized protein. (448 aa)
	A1O7_08713	WD_REPEATS_REGION domain-containing protein. (354 aa)
	A1O7_08400	Methyltransf_25 domain-containing protein. (280 aa)
	A1O7_08475	COP9 signalosome complex subunit 5. (369 aa)
	A1O7_08199	Serine/threonine-protein phosphatase. (325 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (501 aa)
	A1O7_08007	RRM domain-containing protein. (190 aa)
	A1O7_09818	Uncharacterized protein. (447 aa)
	A1O7_09455	Mago-bind domain-containing protein. (221 aa)
	A1O7_09310	mRNA-capping enzyme subunit alpha; Second step of mRNA capping. Transfer of the GMP moiety of GTP to the 5'-end of RNA via an enzyme-GMP covalent reaction intermediate; Belongs to the eukaryotic GTase family. (397 aa)
	A1O7_09394	Goodbye domain-containing protein. (1536 aa)
	A1O7_09224	mRNA (Guanine-N7-)-methyltransferase. (658 aa)

Your Current Organism:

Cladophialophora yegresii

NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O7_00052	A1O7_00376	W9W6J6	W9WHF0	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	WD_REPEATS_REGION domain-containing protein.	0.410
A1O7_00052	A1O7_00542	W9W6J6	W9WHW7	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Uncharacterized protein.	0.437
A1O7_00052	A1O7_01535	W9W6J6	W9WJN6	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Serine/threonine-protein phosphatase.	0.892
A1O7_00052	A1O7_03045	W9W6J6	W9W3H0	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Uncharacterized protein.	0.700
A1O7_00052	A1O7_03119	W9W6J6	W9WDP3	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	DUF2439 domain-containing protein.	0.680
A1O7_00052	A1O7_04610	W9W6J6	W9VXA1	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Uncharacterized protein.	0.497
A1O7_00052	A1O7_05027	W9W6J6	W9WRB6	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.	0.998
A1O7_00052	A1O7_05278	W9W6J6	W9W806	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Regulator-nonsense transcripts 1.	0.713
A1O7_00052	A1O7_05542	W9W6J6	W9VRD6	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Uncharacterized protein.	0.497
A1O7_00052	A1O7_05866	W9W6J6	W9W1Q8	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.999
A1O7_00052	A1O7_06203	W9W6J6	W9VT71	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	RRM domain-containing protein.	0.596
A1O7_00052	A1O7_07537	W9W6J6	W9VWW1	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.892
A1O7_00052	A1O7_08199	W9W6J6	W9VID4	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Serine/threonine-protein phosphatase.	0.999
A1O7_00052	A1O7_08475	W9W6J6	W9VIN5	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	COP9 signalosome complex subunit 5.	0.497
A1O7_00052	A1O7_08731	W9W6J6	W9VUE8	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.701
A1O7_00052	A1O7_09834	W9W6J6	W9W7F7	Protein phosphatase 2 (Formerly 2A), regulatory subunit A.	Nuclear cap-binding protein subunit 2.	0.707
A1O7_00204	A1O7_00376	W9X068	W9WHF0	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.980
A1O7_00204	A1O7_01535	W9X068	W9WJN6	RRM domain-containing protein.	Serine/threonine-protein phosphatase.	0.715
A1O7_00204	A1O7_01583	W9X068	W9WAV6	RRM domain-containing protein.	Uncharacterized protein.	0.928
A1O7_00204	A1O7_01964	W9X068	W9WAH8	RRM domain-containing protein.	Uncharacterized protein.	0.959