STRINGSTRING
A1O7_08569 A1O7_08569 PAN2 PAN2 A1O7_09214 A1O7_09214 A1O7_09219 A1O7_09219 A1O7_09409 A1O7_09409 A1O7_09444 A1O7_09444 A1O7_09697 A1O7_09697 A1O7_09737 A1O7_09737 LSM4 LSM4 LSM1 LSM1 A1O7_08445 A1O7_08445 A1O7_08446 A1O7_08446 A1O7_08541 A1O7_08541 A1O7_08978 A1O7_08978 A1O7_09272 A1O7_09272 A1O7_06892 A1O7_06892 A1O7_09372 A1O7_09372 A1O7_07106 A1O7_07106 A1O7_07296 A1O7_07296 A1O7_07287 A1O7_07287 A1O7_07745 A1O7_07745 A1O7_09513 A1O7_09513 A1O7_09588 A1O7_09588 A1O7_05400 A1O7_05400 A1O7_05541 A1O7_05541 A1O7_10112 A1O7_10112 LSM8 LSM8 A1O7_09036 A1O7_09036 A1O7_06298 A1O7_06298 A1O7_06954 A1O7_06954 A1O7_08711 A1O7_08711 A1O7_08731 A1O7_08731 A1O7_08807 A1O7_08807 A1O7_03833 A1O7_03833 A1O7_09057 A1O7_09057 A1O7_04106 A1O7_04106 A1O7_04429 A1O7_04429 A1O7_04315 A1O7_04315 A1O7_04601 A1O7_04601 A1O7_07395 A1O7_07395 A1O7_07888 A1O7_07888 A1O7_05313 A1O7_05313 A1O7_07904 A1O7_07904 A1O7_05409 A1O7_05409 A1O7_05464 A1O7_05464 A1O7_05977 A1O7_05977 A1O7_02001 A1O7_02001 A1O7_06067 A1O7_06067 A1O7_06230 A1O7_06230 PAN3 PAN3 A1O7_02354 A1O7_02354 A1O7_02471 A1O7_02471 A1O7_02556 A1O7_02556 A1O7_06140 A1O7_06140 A1O7_02852 A1O7_02852 A1O7_02919 A1O7_02919 A1O7_03360 A1O7_03360 A1O7_03273 A1O7_03273 A1O7_04052 A1O7_04052 A1O7_04143 A1O7_04143 A1O7_04230 A1O7_04230 A1O7_03867 A1O7_03867 A1O7_09271 A1O7_09271 A1O7_04888 A1O7_04888 A1O7_05163 A1O7_05163 A1O7_10105 A1O7_10105 A1O7_02326 A1O7_02326 LSM5 LSM5 A1O7_01944 A1O7_01944 A1O7_02412 A1O7_02412 A1O7_01989 A1O7_01989 A1O7_08558 A1O7_08558 LSM3 LSM3 A1O7_02623 A1O7_02623 A1O7_08704 A1O7_08704 A1O7_08895 A1O7_08895 A1O7_01729 A1O7_01729 A1O7_01769 A1O7_01769 A1O7_02775 A1O7_02775 A1O7_03317 A1O7_03317 A1O7_06893 A1O7_06893 A1O7_03225 A1O7_03225 A1O7_00527 A1O7_00527 A1O7_01139 A1O7_01139 A1O7_01149 A1O7_01149 A1O7_01711 A1O7_01711 A1O7_01746 A1O7_01746 A1O7_01557 A1O7_01557 A1O7_06530 A1O7_06530 A1O7_03117 A1O7_03117 A1O7_00034 A1O7_00034 A1O7_01630 A1O7_01630 A1O7_01905 A1O7_01905
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A1O7_08569Uncharacterized protein. (332 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1183 aa)
A1O7_09214YL1_C domain-containing protein. (628 aa)
A1O7_09219Uncharacterized protein. (291 aa)
A1O7_094092-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. (447 aa)
A1O7_09444PH domain-containing protein. (1171 aa)
A1O7_09697RNase_PH domain-containing protein. (278 aa)
A1O7_09737Importin N-terminal domain-containing protein. (1044 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (145 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (205 aa)
A1O7_08445Uncharacterized protein. (280 aa)
A1O7_08446RNase_PH domain-containing protein. (312 aa)
A1O7_08541Uncharacterized protein. (357 aa)
A1O7_08978PAT1 domain-containing protein. (819 aa)
A1O7_09272Uncharacterized protein. (763 aa)
A1O7_06892CCHC-type domain-containing protein. (207 aa)
A1O7_09372Uncharacterized protein. (1259 aa)
A1O7_07106U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O7_07296Uncharacterized protein. (2127 aa)
A1O7_07287NTP_transf_9 domain-containing protein. (163 aa)
A1O7_077455'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1055 aa)
A1O7_09513RNase_PH domain-containing protein. (410 aa)
A1O7_09588Uncharacterized protein. (562 aa)
A1O7_05400cobW domain-containing protein. (400 aa)
A1O7_05541Uncharacterized protein. (751 aa)
A1O7_10112Uncharacterized protein. (245 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O7_09036Uncharacterized protein. (211 aa)
A1O7_06298Uncharacterized protein. (457 aa)
A1O7_06954T-complex protein 1 subunit delta. (537 aa)
A1O7_08711Uncharacterized protein. (558 aa)
A1O7_08731Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (774 aa)
A1O7_08807T-complex protein 1 subunit alpha. (568 aa)
A1O7_03833Uncharacterized protein. (526 aa)
A1O7_09057Uncharacterized protein. (414 aa)
A1O7_04106Uncharacterized protein. (632 aa)
A1O7_04429Exosome complex component RRP4. (350 aa)
A1O7_04315T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (559 aa)
A1O7_046015'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1411 aa)
A1O7_07395Endo/exonuclease/phosphatase domain-containing protein. (747 aa)
A1O7_07888T-complex protein 1 subunit gamma. (560 aa)
A1O7_05313NOT2_3_5 domain-containing protein. (415 aa)
A1O7_07904Uncharacterized protein. (512 aa)
A1O7_05409T-complex protein 1 subunit zeta. (496 aa)
A1O7_05464Uncharacterized protein. (1112 aa)
A1O7_05977WD_REPEATS_REGION domain-containing protein. (321 aa)
A1O7_02001RNB domain-containing protein. (1090 aa)
A1O7_06067RNB domain-containing protein. (1353 aa)
A1O7_06230Uncharacterized protein. (400 aa)
PAN3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (666 aa)
A1O7_02354Uncharacterized protein. (627 aa)
A1O7_02471Small nuclear ribonucleoprotein. (133 aa)
A1O7_02556Uncharacterized protein. (492 aa)
A1O7_06140Uncharacterized protein. (1069 aa)
A1O7_02852Uncharacterized protein. (1052 aa)
A1O7_02919RNase_PH domain-containing protein. (353 aa)
A1O7_03360Uncharacterized protein. (484 aa)
A1O7_03273Uncharacterized protein. (1444 aa)
A1O7_04052ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (513 aa)
A1O7_04143Uncharacterized protein. (254 aa)
A1O7_04230Uncharacterized protein. (1404 aa)
A1O7_03867HRDC domain-containing protein. (824 aa)
A1O7_09271Uncharacterized protein. (872 aa)
A1O7_04888Uncharacterized protein. (593 aa)
A1O7_05163Heat shock protein 60; Belongs to the chaperonin (HSP60) family. (583 aa)
A1O7_10105Hsp70-like protein; Belongs to the heat shock protein 70 family. (675 aa)
A1O7_02326Nudix hydrolase domain-containing protein. (344 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (150 aa)
A1O7_01944RNase_PH domain-containing protein. (258 aa)
A1O7_02412Cellular nucleic acid-binding protein. (229 aa)
A1O7_01989Uncharacterized protein. (636 aa)
A1O7_08558Uncharacterized protein. (1335 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O7_02623Enolase domain-containing protein. (109 aa)
A1O7_08704Nudix hydrolase domain-containing protein. (889 aa)
A1O7_08895Uncharacterized protein. (688 aa)
A1O7_01729Small nuclear ribonucleoprotein. (95 aa)
A1O7_01769cobW domain-containing protein. (378 aa)
A1O7_02775NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. (276 aa)
A1O7_03317Uncharacterized protein. (339 aa)
A1O7_06893Uncharacterized protein. (181 aa)
A1O7_03225ANK_REP_REGION domain-containing protein. (1026 aa)
A1O7_00527T-complex protein 1 subunit epsilon. (548 aa)
A1O7_01139Uncharacterized protein; Belongs to the RNR ribonuclease family. (1006 aa)
A1O7_01149Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (294 aa)
A1O7_017112-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2; Belongs to the DPH1/DPH2 family. DPH2 subfamily. (578 aa)
A1O7_01746T-complex protein 1 subunit beta. (531 aa)
A1O7_01557Enolase. (438 aa)
A1O7_06530KH_dom_type_1 domain-containing protein. (245 aa)
A1O7_03117ATPase. (283 aa)
A1O7_00034Uncharacterized protein. (274 aa)
A1O7_01630Uncharacterized protein. (1339 aa)
A1O7_01905ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (796 aa)
Your Current Organism:
Cladophialophora yegresii
NCBI taxonomy Id: 1182544
Other names: C. yegresii CBS 114405, Cladophialophora yegresii CBS 114405
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