40 items (Exophiala aquamarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O9_12054	Small nuclear ribonucleoprotein B and B. (213 aa)
	A1O9_11760	Nuclear cap-binding protein subunit 2. (175 aa)
	A1O9_12109	Serine/threonine-protein kinase PRP4. (501 aa)
	A1O9_11844	Uncharacterized protein. (941 aa)
	A1O9_11714	RRM domain-containing protein. (116 aa)
	A1O9_10324	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A1O9_10489	RRM domain-containing protein. (384 aa)
	A1O9_10754	MPN domain-containing protein. (2509 aa)
	A1O9_09799	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	A1O9_09732	U2 small nuclear ribonucleoprotein A. (257 aa)
	A1O9_08784	Matrin-type domain-containing protein. (512 aa)
	A1O9_08715	Uncharacterized protein. (666 aa)
	A1O9_07439	Matrin-type domain-containing protein. (237 aa)
	A1O9_08491	Uncharacterized protein. (272 aa)
	A1O9_07635	Uncharacterized protein. (1178 aa)
	A1O9_07561	Nop domain-containing protein. (599 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O9_11646	PSP domain-containing protein. (587 aa)
	A1O9_11443	Uncharacterized protein. (156 aa)
	A1O9_07146	Pre-mRNA-splicing factor rse1. (1211 aa)
	A1O9_05456	Uncharacterized protein. (1291 aa)
	A1O9_11033	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	A1O9_10325	Uncharacterized protein. (401 aa)
	A1O9_06060	WD_REPEATS_REGION domain-containing protein. (359 aa)
	A1O9_06184	Uncharacterized protein. (531 aa)
	A1O9_03769	Uncharacterized protein. (2226 aa)
	A1O9_03839	Small nuclear ribonucleoprotein G. (80 aa)
	A1O9_08190	Small nuclear ribonucleoprotein Sm D2. (158 aa)
	A1O9_04972	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	A1O9_05121	Uncharacterized protein. (109 aa)
	A1O9_02485	Uncharacterized protein. (570 aa)
	A1O9_03172	Uncharacterized protein. (844 aa)
	A1O9_03128	Small nuclear ribonucleoprotein F. (91 aa)
	A1O9_03166	Uncharacterized protein. (335 aa)
	A1O9_00429	Uncharacterized protein. (305 aa)
	A1O9_00959	SF3b1 domain-containing protein. (1228 aa)
	A1O9_00310	zf-U1 domain-containing protein. (66 aa)
	A1O9_01313	Elongation factor 2. (982 aa)
	A1O9_00968	Splicing factor subunit; Belongs to the SF3B5 family. (85 aa)
	A1O9_01225	Pre-mRNA-splicing ATP-dependent RNA helicase prp28. (843 aa)

Your Current Organism:

Exophiala aquamarina

NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O9_00310	A1O9_00429	A0A072PSP2	A0A072PRR9	zf-U1 domain-containing protein.	Uncharacterized protein.	0.965
A1O9_00310	A1O9_00959	A0A072PSP2	A0A072PSA4	zf-U1 domain-containing protein.	SF3b1 domain-containing protein.	0.986
A1O9_00310	A1O9_00968	A0A072PSP2	A0A072PUG6	zf-U1 domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.979
A1O9_00310	A1O9_01225	A0A072PSP2	A0A072PV89	zf-U1 domain-containing protein.	Pre-mRNA-splicing ATP-dependent RNA helicase prp28.	0.972
A1O9_00310	A1O9_01313	A0A072PSP2	A0A072PU16	zf-U1 domain-containing protein.	Elongation factor 2.	0.868
A1O9_00310	A1O9_02485	A0A072PSP2	A0A072PM17	zf-U1 domain-containing protein.	Uncharacterized protein.	0.872
A1O9_00310	A1O9_03128	A0A072PSP2	A0A072PNU2	zf-U1 domain-containing protein.	Small nuclear ribonucleoprotein F.	0.993
A1O9_00310	A1O9_03166	A0A072PSP2	A0A072PQH6	zf-U1 domain-containing protein.	Uncharacterized protein.	0.978
A1O9_00310	A1O9_03172	A0A072PSP2	A0A072PND4	zf-U1 domain-containing protein.	Uncharacterized protein.	0.944
A1O9_00310	A1O9_03769	A0A072PSP2	A0A072PGE3	zf-U1 domain-containing protein.	Uncharacterized protein.	0.849
A1O9_00310	A1O9_03839	A0A072PSP2	A0A072PGL2	zf-U1 domain-containing protein.	Small nuclear ribonucleoprotein G.	0.995
A1O9_00310	A1O9_04972	A0A072PSP2	A0A072PK38	zf-U1 domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.993
A1O9_00310	A1O9_05121	A0A072PSP2	A0A072PKA4	zf-U1 domain-containing protein.	Uncharacterized protein.	0.936
A1O9_00310	A1O9_05456	A0A072PSP2	A0A072PBP7	zf-U1 domain-containing protein.	Uncharacterized protein.	0.950
A1O9_00310	A1O9_06060	A0A072PSP2	A0A072PEE1	zf-U1 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.764
A1O9_00310	A1O9_06184	A0A072PSP2	A0A072PG79	zf-U1 domain-containing protein.	Uncharacterized protein.	0.837
A1O9_00310	A1O9_07146	A0A072PSP2	A0A072PAQ2	zf-U1 domain-containing protein.	Pre-mRNA-splicing factor rse1.	0.966
A1O9_00310	A1O9_07439	A0A072PSP2	A0A072P6X9	zf-U1 domain-containing protein.	Matrin-type domain-containing protein.	0.951
A1O9_00310	A1O9_07561	A0A072PSP2	A0A072P7Z6	zf-U1 domain-containing protein.	Nop domain-containing protein.	0.773
A1O9_00310	A1O9_07635	A0A072PSP2	A0A072P7F2	zf-U1 domain-containing protein.	Uncharacterized protein.	0.872