11 items (Exophiala aquamarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O9_10361	PAT1 domain-containing protein. (808 aa)
	A1O9_11036	Sm domain-containing protein. (105 aa)
	A1O9_09221	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O9_09255	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1415 aa)
	A1O9_08092	Nudix hydrolase domain-containing protein. (791 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (101 aa)
	A1O9_05375	Uncharacterized protein. (267 aa)
	A1O9_02689	Uncharacterized protein. (327 aa)
	A1O9_07165	Small nuclear ribonucleoprotein. (136 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (193 aa)
	A1O9_00746	Small nuclear ribonucleoprotein. (98 aa)

Your Current Organism:

Exophiala aquamarina

NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O9_00746	A1O9_02689	A0A072PTZ2	A0A072PLZ8	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.746
A1O9_00746	A1O9_05375	A0A072PTZ2	A0A072PDT8	Small nuclear ribonucleoprotein.	Uncharacterized protein.	0.970
A1O9_00746	A1O9_07165	A0A072PTZ2	A0A072PN59	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein.	0.999
A1O9_00746	A1O9_08092	A0A072PTZ2	A0A072P6L0	Small nuclear ribonucleoprotein.	Nudix hydrolase domain-containing protein.	0.676
A1O9_00746	A1O9_09221	A0A072PTZ2	A0A072P3X5	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O9_00746	A1O9_09255	A0A072PTZ2	A0A072P6C6	Small nuclear ribonucleoprotein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.815
A1O9_00746	A1O9_10361	A0A072PTZ2	A0A072P0M8	Small nuclear ribonucleoprotein.	PAT1 domain-containing protein.	0.999
A1O9_00746	A1O9_11036	A0A072PTZ2	A0A072P1I1	Small nuclear ribonucleoprotein.	Sm domain-containing protein.	0.999
A1O9_00746	LSM1	A0A072PTZ2	A0A072PPL5	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.970
A1O9_00746	LSM4	A0A072PTZ2	A0A072PBZ0	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O9_02689	A1O9_00746	A0A072PLZ8	A0A072PTZ2	Uncharacterized protein.	Small nuclear ribonucleoprotein.	0.746
A1O9_02689	A1O9_05375	A0A072PLZ8	A0A072PDT8	Uncharacterized protein.	Uncharacterized protein.	0.829
A1O9_02689	A1O9_07165	A0A072PLZ8	A0A072PN59	Uncharacterized protein.	Small nuclear ribonucleoprotein.	0.821
A1O9_02689	A1O9_08092	A0A072PLZ8	A0A072P6L0	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.986
A1O9_02689	A1O9_09221	A0A072PLZ8	A0A072P3X5	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.861
A1O9_02689	A1O9_09255	A0A072PLZ8	A0A072P6C6	Uncharacterized protein.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.998
A1O9_02689	A1O9_10361	A0A072PLZ8	A0A072P0M8	Uncharacterized protein.	PAT1 domain-containing protein.	0.974
A1O9_02689	A1O9_11036	A0A072PLZ8	A0A072P1I1	Uncharacterized protein.	Sm domain-containing protein.	0.815
A1O9_02689	LSM1	A0A072PLZ8	A0A072PPL5	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.829
A1O9_02689	LSM4	A0A072PLZ8	A0A072PBZ0	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.889