STRINGSTRING
A1O9_10828 A1O9_10828 A1O9_11036 A1O9_11036 A1O9_09799 A1O9_09799 A1O9_11646 A1O9_11646 LSM8 LSM8 A1O9_07653 A1O9_07653 A1O9_07561 A1O9_07561 A1O9_08190 A1O9_08190 A1O9_05121 A1O9_05121 A1O9_02696 A1O9_02696 A1O9_00968 A1O9_00968 A1O9_03839 A1O9_03839 A1O9_09221 A1O9_09221 A1O9_12054 A1O9_12054 A1O9_11714 A1O9_11714
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A1O9_10828Uncharacterized protein. (248 aa)
A1O9_11036Sm domain-containing protein. (105 aa)
A1O9_09799Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
A1O9_11646PSP domain-containing protein. (587 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O9_07653Matrin-type domain-containing protein. (299 aa)
A1O9_07561Nop domain-containing protein. (599 aa)
A1O9_08190Small nuclear ribonucleoprotein Sm D2. (158 aa)
A1O9_05121Uncharacterized protein. (109 aa)
A1O9_02696RRM domain-containing protein. (334 aa)
A1O9_00968Splicing factor subunit; Belongs to the SF3B5 family. (85 aa)
A1O9_03839Small nuclear ribonucleoprotein G. (80 aa)
A1O9_09221U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
A1O9_12054Small nuclear ribonucleoprotein B and B. (213 aa)
A1O9_11714RRM domain-containing protein. (116 aa)
Your Current Organism:
Exophiala aquamarina
NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918
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