STRINGSTRING
A1O9_03838 A1O9_03838 A1O9_13025 A1O9_13025 A1O9_12264 A1O9_12264 A1O9_12113 A1O9_12113 A1O9_11760 A1O9_11760 A1O9_12184 A1O9_12184 A1O9_12114 A1O9_12114 A1O9_12195 A1O9_12195 A1O9_11640 A1O9_11640 A1O9_11685 A1O9_11685 A1O9_11469 A1O9_11469 A1O9_10942 A1O9_10942 A1O9_09465 A1O9_09465 A1O9_09557 A1O9_09557 A1O9_09973 A1O9_09973 A1O9_08853 A1O9_08853 A1O9_09259 A1O9_09259 A1O9_09040 A1O9_09040 A1O9_08239 A1O9_08239 A1O9_08826 A1O9_08826 A1O9_07640 A1O9_07640 A1O9_07627 A1O9_07627 A1O9_08238 A1O9_08238 A1O9_08268 A1O9_08268 A1O9_07885 A1O9_07885 A1O9_06798 A1O9_06798 A1O9_06795 A1O9_06795 A1O9_11575 A1O9_11575 A1O9_07156 A1O9_07156 A1O9_10841 A1O9_10841 A1O9_05517 A1O9_05517 A1O9_05439 A1O9_05439 A1O9_05960 A1O9_05960 A1O9_10247 A1O9_10247 A1O9_04580 A1O9_04580 A1O9_04657 A1O9_04657 A1O9_04999 A1O9_04999 A1O9_08385 A1O9_08385 A1O9_05021 A1O9_05021 A1O9_05081 A1O9_05081 A1O9_01972 A1O9_01972 A1O9_07671 A1O9_07671 A1O9_02018 A1O9_02018 A1O9_02543 A1O9_02543 A1O9_02900 A1O9_02900 A1O9_02791 A1O9_02791 A1O9_02762 A1O9_02762 A1O9_03172 A1O9_03172 A1O9_03342 A1O9_03342 A1O9_00331 A1O9_00331 A1O9_05740 A1O9_05740 A1O9_03323 A1O9_03323 A1O9_00587 A1O9_00587 A1O9_00520 A1O9_00520 A1O9_01047 A1O9_01047 A1O9_00927 A1O9_00927 A1O9_01077 A1O9_01077 A1O9_01261 A1O9_01261 A1O9_03858 A1O9_03858 A1O9_01597 A1O9_01597 A1O9_02096 A1O9_02096 A1O9_01357 A1O9_01357 A1O9_01433 A1O9_01433 A1O9_01838 A1O9_01838
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A1O9_03838Uncharacterized protein. (1288 aa)
A1O9_13025Transcription initiation factor TFIID subunit 5. (717 aa)
A1O9_12264DNA-directed RNA polymerase II subunit RPB3. (336 aa)
A1O9_12113DNA-directed RNA polymerase II subunit RPB7. (167 aa)
A1O9_11760Nuclear cap-binding protein subunit 2. (175 aa)
A1O9_12184HTH TFE/IIEalpha-type domain-containing protein. (471 aa)
A1O9_12114Uncharacterized protein. (552 aa)
A1O9_12195DNA excision repair protein ERCC-3. (846 aa)
A1O9_11640TFIIB-type domain-containing protein. (361 aa)
A1O9_11685DNA repair helicase rad15. (774 aa)
A1O9_11469RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (853 aa)
A1O9_10942Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (267 aa)
A1O9_09465TFIIS N-terminal domain-containing protein. (396 aa)
A1O9_09557DUF3591 domain-containing protein. (1153 aa)
A1O9_09973Uncharacterized protein. (271 aa)
A1O9_08853Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (715 aa)
A1O9_09259Transcription initiation factor TFIID subunit 6. (450 aa)
A1O9_09040Xaa-Pro aminopeptidase. (1018 aa)
A1O9_08239Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
A1O9_08826Uncharacterized protein; Belongs to the cyclin family. (408 aa)
A1O9_07640Uncharacterized protein. (426 aa)
A1O9_07627Uncharacterized protein. (80 aa)
A1O9_08238Uncharacterized protein. (324 aa)
A1O9_08268DUF4211 domain-containing protein. (736 aa)
A1O9_07885Uncharacterized protein. (351 aa)
A1O9_06798DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1763 aa)
A1O9_06795DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
A1O9_11575DNA-directed RNA polymerase I, II, and III subunit RPABC1. (238 aa)
A1O9_07156DNA-directed RNA polymerase I, II, and III subunit RPABC5. (72 aa)
A1O9_10841DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
A1O9_05517Uncharacterized protein. (634 aa)
A1O9_05439TFIIE beta domain-containing protein. (232 aa)
A1O9_05960Uncharacterized protein. (530 aa)
A1O9_10247RNA_pol_L_2 domain-containing protein. (412 aa)
A1O9_04580Transcription initiation factor TFIID subunit 12. (557 aa)
A1O9_04657Uncharacterized protein. (553 aa)
A1O9_04999RPOL4c domain-containing protein. (152 aa)
A1O9_08385Uncharacterized protein. (436 aa)
A1O9_05021Uncharacterized protein. (119 aa)
A1O9_05081BTB domain-containing protein. (830 aa)
A1O9_01972TATA-box-binding protein. (254 aa)
A1O9_07671Uncharacterized protein. (382 aa)
A1O9_02018CYCLIN domain-containing protein; Belongs to the cyclin family. (388 aa)
A1O9_02543Uncharacterized protein. (609 aa)
A1O9_02900CYCLIN domain-containing protein; Belongs to the cyclin family. (468 aa)
A1O9_02791Uncharacterized protein. (236 aa)
A1O9_02762Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (118 aa)
A1O9_03172Uncharacterized protein. (844 aa)
A1O9_03342CFEM domain-containing protein. (281 aa)
A1O9_00331Plus3 domain-containing protein. (610 aa)
A1O9_05740Uncharacterized protein. (669 aa)
A1O9_03323CMGC/CDK protein kinase. (690 aa)
A1O9_00587Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1424 aa)
A1O9_00520RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
A1O9_01047CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (421 aa)
A1O9_00927RING-type domain-containing protein. (270 aa)
A1O9_01077Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1076 aa)
A1O9_01261RPOL9 domain-containing protein. (111 aa)
A1O9_03858CDC73_C domain-containing protein. (443 aa)
A1O9_01597TAFII28 domain-containing protein. (351 aa)
A1O9_02096Uncharacterized protein. (1240 aa)
A1O9_01357TAFII55_N domain-containing protein. (736 aa)
A1O9_01433General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (466 aa)
A1O9_01838FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (564 aa)
Your Current Organism:
Exophiala aquamarina
NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918
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