43 items (Exophiala aquamarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O9_04999	RPOL4c domain-containing protein. (152 aa)
	A1O9_05021	Uncharacterized protein. (119 aa)
	A1O9_05081	BTB domain-containing protein. (830 aa)
	A1O9_01972	TATA-box-binding protein. (254 aa)
	A1O9_07671	Uncharacterized protein. (382 aa)
	A1O9_02018	CYCLIN domain-containing protein; Belongs to the cyclin family. (388 aa)
	A1O9_02791	Uncharacterized protein. (236 aa)
	A1O9_00520	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
	A1O9_01047	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily. (421 aa)
	A1O9_00927	RING-type domain-containing protein. (270 aa)
	A1O9_01261	RPOL9 domain-containing protein. (111 aa)
	A1O9_03838	Uncharacterized protein. (1288 aa)
	A1O9_01597	TAFII28 domain-containing protein. (351 aa)
	A1O9_01357	TAFII55_N domain-containing protein. (736 aa)
	A1O9_01433	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (466 aa)
	A1O9_12264	DNA-directed RNA polymerase II subunit RPB3. (336 aa)
	A1O9_13025	Transcription initiation factor TFIID subunit 5. (717 aa)
	A1O9_09259	Transcription initiation factor TFIID subunit 6. (450 aa)
	A1O9_08853	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (715 aa)
	A1O9_09973	Uncharacterized protein. (271 aa)
	A1O9_09557	DUF3591 domain-containing protein. (1153 aa)
	A1O9_10942	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (267 aa)
	A1O9_11685	DNA repair helicase rad15. (774 aa)
	A1O9_11640	TFIIB-type domain-containing protein. (361 aa)
	A1O9_12195	DNA excision repair protein ERCC-3. (846 aa)
	A1O9_12114	Uncharacterized protein. (552 aa)
	A1O9_12184	HTH TFE/IIEalpha-type domain-containing protein. (471 aa)
	A1O9_12113	DNA-directed RNA polymerase II subunit RPB7. (167 aa)
	A1O9_08239	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	A1O9_07627	Uncharacterized protein. (80 aa)
	A1O9_08238	Uncharacterized protein. (324 aa)
	A1O9_08268	DUF4211 domain-containing protein. (736 aa)
	A1O9_07885	Uncharacterized protein. (351 aa)
	A1O9_06798	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1763 aa)
	A1O9_06795	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
	A1O9_11575	DNA-directed RNA polymerase I, II, and III subunit RPABC1. (238 aa)
	A1O9_07156	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (72 aa)
	A1O9_10841	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	A1O9_05517	Uncharacterized protein. (634 aa)
	A1O9_05439	TFIIE beta domain-containing protein. (232 aa)
	A1O9_10247	RNA_pol_L_2 domain-containing protein. (412 aa)
	A1O9_04580	Transcription initiation factor TFIID subunit 12. (557 aa)
	A1O9_08385	Uncharacterized protein. (436 aa)

Your Current Organism:

Exophiala aquamarina

NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O9_00520	A1O9_00927	A0A072PRZ9	A0A072PT73	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	RING-type domain-containing protein.	0.995
A1O9_00520	A1O9_01047	A0A072PRZ9	A0A072PT65	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.	0.965
A1O9_00520	A1O9_01261	A0A072PRZ9	A0A072PTA1	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	RPOL9 domain-containing protein.	0.958
A1O9_00520	A1O9_01357	A0A072PRZ9	A0A072Q636	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	TAFII55_N domain-containing protein.	0.857
A1O9_00520	A1O9_01433	A0A072PRZ9	A0A072Q6A4	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
A1O9_00520	A1O9_01597	A0A072PRZ9	A0A072PU35	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	TAFII28 domain-containing protein.	0.878
A1O9_00520	A1O9_01972	A0A072PRZ9	A0A072PKK8	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	TATA-box-binding protein.	0.969
A1O9_00520	A1O9_02018	A0A072PRZ9	A0A072PL27	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.979
A1O9_00520	A1O9_02791	A0A072PRZ9	A0A072PMY7	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.878
A1O9_00520	A1O9_03838	A0A072PRZ9	A0A072PTW9	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.878
A1O9_00520	A1O9_04580	A0A072PRZ9	A0A072PI06	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Transcription initiation factor TFIID subunit 12.	0.883
A1O9_00520	A1O9_04999	A0A072PRZ9	A0A072PJ47	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	RPOL4c domain-containing protein.	0.958
A1O9_00520	A1O9_05021	A0A072PRZ9	A0A072PJV8	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.959
A1O9_00520	A1O9_05081	A0A072PRZ9	A0A072PK35	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	BTB domain-containing protein.	0.952
A1O9_00520	A1O9_05439	A0A072PRZ9	A0A072PCL1	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	TFIIE beta domain-containing protein.	0.992
A1O9_00520	A1O9_05517	A0A072PRZ9	A0A072PBV1	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.999
A1O9_00520	A1O9_06795	A0A072PRZ9	A0A072P9Q1	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.958
A1O9_00520	A1O9_06798	A0A072PRZ9	A0A072P907	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
A1O9_00520	A1O9_07156	A0A072PRZ9	A0A072PAR2	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.958
A1O9_00520	A1O9_07627	A0A072PRZ9	A0A072P849	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	Uncharacterized protein.	0.961