25 items (Exophiala aquamarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1O9_03477	Suf domain-containing protein. (1016 aa)
	A1O9_03127	Uncharacterized protein. (100 aa)
	A1O9_01574	Uncharacterized protein. (609 aa)
	A1O9_00429	Uncharacterized protein. (305 aa)
	A1O9_03128	Small nuclear ribonucleoprotein F. (91 aa)
	A1O9_03172	Uncharacterized protein. (844 aa)
	A1O9_02657	Cleavage and polyadenylation specificity factor subunit 2. (942 aa)
	A1O9_04830	Uncharacterized protein. (243 aa)
	A1O9_04730	WD_REPEATS_REGION domain-containing protein. (667 aa)
	A1O9_04236	CPSF_A domain-containing protein. (1374 aa)
	A1O9_04505	RRM domain-containing protein. (294 aa)
	A1O9_03839	Small nuclear ribonucleoprotein G. (80 aa)
	A1O9_10325	Uncharacterized protein. (401 aa)
	A1O9_10882	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (267 aa)
	A1O9_07317	Endoribonuclease ysh1. (852 aa)
	A1O9_07969	Apoptosis regulator BCL-W. (175 aa)
	A1O9_06724	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (534 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (507 aa)
	A1O9_09882	Fip1 domain-containing protein. (292 aa)
	A1O9_09799	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	A1O9_10324	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A1O9_12110	DUF3453 domain-containing protein. (784 aa)
	A1O9_11760	Nuclear cap-binding protein subunit 2. (175 aa)
	A1O9_12054	Small nuclear ribonucleoprotein B and B. (213 aa)
	A1O9_12636	Uncharacterized protein. (668 aa)

Your Current Organism:

Exophiala aquamarina

NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O9_00429	A1O9_01574	A0A072PRR9	A0A072PUQ8	Uncharacterized protein.	Uncharacterized protein.	0.795
A1O9_00429	A1O9_02657	A0A072PRR9	A0A072PMV3	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.485
A1O9_00429	A1O9_03172	A0A072PRR9	A0A072PND4	Uncharacterized protein.	Uncharacterized protein.	0.933
A1O9_00429	A1O9_03839	A0A072PRR9	A0A072PGL2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.992
A1O9_00429	A1O9_04505	A0A072PRR9	A0A072PHP9	Uncharacterized protein.	RRM domain-containing protein.	0.795
A1O9_00429	A1O9_04730	A0A072PRR9	A0A072PJG9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.421
A1O9_00429	A1O9_07317	A0A072PRR9	A0A072PBI5	Uncharacterized protein.	Endoribonuclease ysh1.	0.473
A1O9_00429	A1O9_09799	A0A072PRR9	A0A072P1L0	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.992
A1O9_00429	A1O9_10324	A0A072PRR9	A0A072NZS1	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.963
A1O9_00429	A1O9_10325	A0A072PRR9	A0A072PCS5	Uncharacterized protein.	Uncharacterized protein.	0.963
A1O9_00429	A1O9_10882	A0A072PRR9	A0A072PBM3	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.489
A1O9_00429	A1O9_11760	A0A072PRR9	A0A072NW70	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.933
A1O9_00429	A1O9_12054	A0A072PRR9	A0A072NW06	Uncharacterized protein.	Small nuclear ribonucleoprotein B and B.	0.892
A1O9_00429	A1O9_12110	A0A072PRR9	A0A072NXQ2	Uncharacterized protein.	DUF3453 domain-containing protein.	0.685
A1O9_01574	A1O9_00429	A0A072PUQ8	A0A072PRR9	Uncharacterized protein.	Uncharacterized protein.	0.795
A1O9_01574	A1O9_02657	A0A072PUQ8	A0A072PMV3	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.962
A1O9_01574	A1O9_03127	A0A072PUQ8	A0A072Q0Y0	Uncharacterized protein.	Uncharacterized protein.	0.795
A1O9_01574	A1O9_03128	A0A072PUQ8	A0A072PNU2	Uncharacterized protein.	Small nuclear ribonucleoprotein F.	0.795
A1O9_01574	A1O9_03172	A0A072PUQ8	A0A072PND4	Uncharacterized protein.	Uncharacterized protein.	0.897
A1O9_01574	A1O9_03477	A0A072PUQ8	A0A072Q1Z3	Uncharacterized protein.	Suf domain-containing protein.	0.973