15 items (Exophiala aquamarina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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co-expression

protein homology

Your Input:
	A1O9_00950	Sm domain-containing protein. (115 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (101 aa)
	A1O9_03839	Small nuclear ribonucleoprotein G. (80 aa)
	A1O9_08190	Small nuclear ribonucleoprotein Sm D2. (158 aa)
	A1O9_09221	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O9_09799	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	A1O9_11036	Sm domain-containing protein. (105 aa)
	A1O9_10324	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	A1O9_12054	Small nuclear ribonucleoprotein B and B. (213 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	A1O9_07165	Small nuclear ribonucleoprotein. (136 aa)
	A1O9_04972	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (121 aa)
	A1O9_03128	Small nuclear ribonucleoprotein F. (91 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (193 aa)
	A1O9_00746	Small nuclear ribonucleoprotein. (98 aa)

Your Current Organism:

Exophiala aquamarina

NCBI taxonomy Id: 1182545
Other names: E. aquamarina CBS 119918, Exophiala aquamarina CBS 119918

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1O9_00746	A1O9_00950	A0A072PTZ2	A0A072Q4Y3	Small nuclear ribonucleoprotein.	Sm domain-containing protein.	0.878
A1O9_00746	A1O9_03128	A0A072PTZ2	A0A072PNU2	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein F.	0.983
A1O9_00746	A1O9_03839	A0A072PTZ2	A0A072PGL2	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein G.	0.986
A1O9_00746	A1O9_04972	A0A072PTZ2	A0A072PK38	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.977
A1O9_00746	A1O9_07165	A0A072PTZ2	A0A072PN59	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein.	0.999
A1O9_00746	A1O9_08190	A0A072PTZ2	A0A072PIT9	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D2.	0.994
A1O9_00746	A1O9_09221	A0A072PTZ2	A0A072P3X5	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O9_00746	A1O9_09799	A0A072PTZ2	A0A072P1L0	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
A1O9_00746	A1O9_10324	A0A072PTZ2	A0A072NZS1	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein Sm D3.	0.967
A1O9_00746	A1O9_11036	A0A072PTZ2	A0A072P1I1	Small nuclear ribonucleoprotein.	Sm domain-containing protein.	0.999
A1O9_00746	A1O9_12054	A0A072PTZ2	A0A072NW06	Small nuclear ribonucleoprotein.	Small nuclear ribonucleoprotein B and B.	0.906
A1O9_00746	LSM1	A0A072PTZ2	A0A072PPL5	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.970
A1O9_00746	LSM4	A0A072PTZ2	A0A072PBZ0	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A1O9_00746	LSM8	A0A072PTZ2	A0A072P952	Small nuclear ribonucleoprotein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
A1O9_00950	A1O9_00746	A0A072Q4Y3	A0A072PTZ2	Sm domain-containing protein.	Small nuclear ribonucleoprotein.	0.878
A1O9_00950	A1O9_03128	A0A072Q4Y3	A0A072PNU2	Sm domain-containing protein.	Small nuclear ribonucleoprotein F.	0.892
A1O9_00950	A1O9_03839	A0A072Q4Y3	A0A072PGL2	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.963
A1O9_00950	A1O9_04972	A0A072Q4Y3	A0A072PK38	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.968
A1O9_00950	A1O9_07165	A0A072Q4Y3	A0A072PN59	Sm domain-containing protein.	Small nuclear ribonucleoprotein.	0.914
A1O9_00950	A1O9_08190	A0A072Q4Y3	A0A072PIT9	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.974