(6 nodes) FAD-binding domain, PCMH-type network (Deinococcus swuensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIZ45128.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
	AIZ44540.1	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AIZ44539.1	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AIZ44323.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AIZ46670.1	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
	AIZ45378.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)

Your Current Organism:

Deinococcus swuensis

NCBI taxonomy Id: 1182571
Other names: D. swuensis, Deinococcus sp. DY59, Deinococcus swuensis Lee et al. 2015, JCM 18581, KCTC 33033, strain DY59

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIZ44323.1	AIZ45378.1	QR90_03210	QR90_10150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AIZ44539.1	AIZ44540.1	QR90_04680	QR90_04685	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AIZ44540.1	AIZ44539.1	QR90_04685	QR90_04680	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AIZ44540.1	AIZ45128.1	QR90_04685	QR90_08450	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIZ44540.1	AIZ46670.1	QR90_04685	QR90_12835	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AIZ45128.1	AIZ44540.1	QR90_08450	QR90_04685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIZ45128.1	AIZ46670.1	QR90_08450	QR90_12835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AIZ45378.1	AIZ44323.1	QR90_10150	QR90_03210	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AIZ46670.1	AIZ44540.1	QR90_12835	QR90_04685	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycolate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
AIZ46670.1	AIZ45128.1	QR90_12835	QR90_08450	2-hydroxy-acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928