(60 nodes) CheY-like superfamily network (Gloeobacter kilaueensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GKIL_1083	Two component LuxR family transcriptional regulator; COG2197. (217 aa)
	GKIL_1013	Two component LuxR family transcriptional regulator; COG2197. (220 aa)
	rcsB	Two component transcriptional regulator, LuxR family; COG2197. (229 aa)
	GKIL_0935	Response regulator receiver protein; COG2204. (141 aa)
	cph1	Multi-sensor signal transduction histidine kinase; COG4251. (497 aa)
	GKIL_0933	Response regulator receiver protein; COG0745. (147 aa)
	GKIL_0634	Multi-sensor signal transduction histidine kinase; COG2205. (386 aa)
	GKIL_0438	Response regulator receiver protein; COG4565. (136 aa)
	GKIL_0437	Multi-sensor hybrid histidine kinase; COG0642. (386 aa)
	GKIL_0157	Two-component system response regulator; COG2197. (218 aa)
	pleD	DNA-binding response regulator; COG2197. (231 aa)
	arcB	Aerobic respiration control sensor histidine kinase ArcB; COG0642. (738 aa)
	pleD-2	Multi-sensor hybrid histidine kinase; COG0642. (494 aa)
	pleD-3	Multi-sensor hybrid histidine kinase; COG0642. (584 aa)
	phoB	Two component transcriptional regulator, winged helix family; COG0745. (234 aa)
	phoB1	Two component transcriptional regulator, winged helix family; COG0745. (229 aa)
	GKIL_1477	Two-component response regulator; COG2197. (221 aa)
	GKIL_1503	Two component transcriptional regulator, winged helix family; COG0745. (222 aa)
	GKIL_1537	Two component transcriptional regulator; COG0745. (225 aa)
	malT	Two-component response regulator; COG2197. (236 aa)
	GKIL_1845	Two component transcriptional regulator, winged helix family; COG0745. (234 aa)
	cusR	Two component transcriptional regulator, winged helix family; COG0745. (227 aa)
	GKIL_2138	Multi-sensor hybrid histidine kinase; COG0642. (1275 aa)
	rpaB	Two-component response regulator; COG0745. (246 aa)
	GKIL_2251	Two component transcriptional regulator, winged helix family; COG0745. (596 aa)
	GKIL_2253	Response regulator receiver protein; COG0745. (124 aa)
	pleD-5	Multi-sensor signal transduction histidine kinase; COG3920. (1134 aa)
	GKIL_2255	Response regulator receiver sensor signal transduction histidine kinase; COG0642. (403 aa)
	pleD-6	Response regulator receiver sensor signal transduction histidine kinase; COG0642. (357 aa)
	pleD-7	GAF sensor hybrid histidine kinase; COG0642. (1597 aa)
	pleD-8	Multi-sensor hybrid histidine kinase; COG0642. (541 aa)
	kdpE	Two component transcriptional regulator, winged helix family; COG0745. (228 aa)
	GKIL_2722	Two component LuxR family transcriptional regulator; COG2197. (226 aa)
	pilG	Response regulator receiver protein; COG3706. (359 aa)
	GKIL_2884	Two component transcriptional regulator, winged helix family; COG0745. (629 aa)
	pleD-9	Response regulator receiver protein; COG0745. (140 aa)
	GKIL_2945	Two-component response regulator; COG2197. (230 aa)
	trxB-3	Thioredoxin reductase; COG0492. (555 aa)
	GKIL_2974	Two-component response regulator; COG2197. (228 aa)
	GKIL_3006	Two component, sigma54 specific, transcriptional regulator, Fis family; COG2204. (225 aa)
	GKIL_3201	Two component LuxR family transcriptional regulator; COG2197. (253 aa)
	pleC	Cell cycle sensor histidine kinase PleC; COG0642. (620 aa)
	GKIL_3343	Two component transcriptional regulator, LuxR family; COG2197. (224 aa)
	pleD-11	Two component transcriptional regulator, LuxR family; COG2197. (212 aa)
	GKIL_3442	Two-component response regulator; COG2197. (232 aa)
	qseB	Two component transcriptional regulator, winged helix family; COG0745. (230 aa)
	pleD-12	Hybrid sensory kinase in two-component regulatory system with RcsB and YojN; COG0745. (119 aa)
	GKIL_3734	Two component transcriptional regulator, winged helix family; COG0745. (230 aa)
	GKIL_3777	Two component transcriptional regulator, winged helix family; COG0745. (223 aa)
	degU	Two component transcriptional regulator, LuxR family; COG2197. (212 aa)
	GKIL_3845	Two component transcriptional regulator, winged helix family; COG0745. (234 aa)
	GKIL_3941	Two component LuxR family transcriptional regulator; COG2197. (231 aa)
	pleD-13	Multi-sensor hybrid histidine kinase; COG0642. (1117 aa)
	phoB1-2	Two component transcriptional regulator, winged helix family; COG0745. (239 aa)
	GKIL_4146	Two component transcriptional regulator, winged helix family; COG0745. (234 aa)
	GKIL_4322	DNA-binding response regulator; COG2197. (207 aa)
	GKIL_4448	Two-component response regulator; COG0745. (330 aa)
	rpaA	Two component transcriptional regulator, winged helix family; COG0745. (242 aa)
	GKIL_4456	Two component LuxR family transcriptional regulator; COG2197. (213 aa)
	pleD-14	Response regulator receiver protein; COG0745. (132 aa)

Your Current Organism:

Gloeobacter kilaueensis

NCBI taxonomy Id: 1183438
Other names: G. kilaueensis JS1, Gloeobacter kilaueensis JS1, Gloeobacter sp. JS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GKIL_0157	GKIL_0437	GKIL_0157	GKIL_0437	Two-component system response regulator; COG2197.	Multi-sensor hybrid histidine kinase; COG0642.	0.677
GKIL_0157	GKIL_2138	GKIL_0157	GKIL_2138	Two-component system response regulator; COG2197.	Multi-sensor hybrid histidine kinase; COG0642.	0.431
GKIL_0157	GKIL_2884	GKIL_0157	GKIL_2884	Two-component system response regulator; COG2197.	Two component transcriptional regulator, winged helix family; COG0745.	0.436
GKIL_0157	arcB	GKIL_0157	GKIL_0056	Two-component system response regulator; COG2197.	Aerobic respiration control sensor histidine kinase ArcB; COG0642.	0.632
GKIL_0157	pleD-2	GKIL_0157	GKIL_1101	Two-component system response regulator; COG2197.	Multi-sensor hybrid histidine kinase; COG0642.	0.472
GKIL_0157	pleD-5	GKIL_0157	GKIL_2254	Two-component system response regulator; COG2197.	Multi-sensor signal transduction histidine kinase; COG3920.	0.728
GKIL_0157	pleD-7	GKIL_0157	GKIL_2669	Two-component system response regulator; COG2197.	GAF sensor hybrid histidine kinase; COG0642.	0.763
GKIL_0157	pleD-8	GKIL_0157	GKIL_2670	Two-component system response regulator; COG2197.	Multi-sensor hybrid histidine kinase; COG0642.	0.672
GKIL_0437	GKIL_0157	GKIL_0437	GKIL_0157	Multi-sensor hybrid histidine kinase; COG0642.	Two-component system response regulator; COG2197.	0.677
GKIL_0437	GKIL_0438	GKIL_0437	GKIL_0438	Multi-sensor hybrid histidine kinase; COG0642.	Response regulator receiver protein; COG4565.	0.731
GKIL_0437	GKIL_0634	GKIL_0437	GKIL_0634	Multi-sensor hybrid histidine kinase; COG0642.	Multi-sensor signal transduction histidine kinase; COG2205.	0.737
GKIL_0437	GKIL_0933	GKIL_0437	GKIL_0933	Multi-sensor hybrid histidine kinase; COG0642.	Response regulator receiver protein; COG0745.	0.687
GKIL_0437	GKIL_0935	GKIL_0437	GKIL_0935	Multi-sensor hybrid histidine kinase; COG0642.	Response regulator receiver protein; COG2204.	0.498
GKIL_0437	GKIL_1013	GKIL_0437	GKIL_1013	Multi-sensor hybrid histidine kinase; COG0642.	Two component LuxR family transcriptional regulator; COG2197.	0.677
GKIL_0437	GKIL_1083	GKIL_0437	GKIL_1083	Multi-sensor hybrid histidine kinase; COG0642.	Two component LuxR family transcriptional regulator; COG2197.	0.677
GKIL_0437	GKIL_1477	GKIL_0437	GKIL_1477	Multi-sensor hybrid histidine kinase; COG0642.	Two-component response regulator; COG2197.	0.914
GKIL_0437	GKIL_1503	GKIL_0437	GKIL_1503	Multi-sensor hybrid histidine kinase; COG0642.	Two component transcriptional regulator, winged helix family; COG0745.	0.831
GKIL_0437	GKIL_1537	GKIL_0437	GKIL_1537	Multi-sensor hybrid histidine kinase; COG0642.	Two component transcriptional regulator; COG0745.	0.749
GKIL_0437	GKIL_1845	GKIL_0437	GKIL_1845	Multi-sensor hybrid histidine kinase; COG0642.	Two component transcriptional regulator, winged helix family; COG0745.	0.858
GKIL_0437	GKIL_2138	GKIL_0437	GKIL_2138	Multi-sensor hybrid histidine kinase; COG0642.	Multi-sensor hybrid histidine kinase; COG0642.	0.999