(7 nodes) Latent infection - Other responses of Mtb to phagocytosis, and Oligopeptide/dipeptide ABC transporter, C-terminal network (Thermogladius calderae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFK51584.1	Oligopeptide/dipeptide ABC transporter, ATPase subunit. (371 aa)
	AFK51585.1	Oligopeptide/dipeptide ABC transporter, ATPase subunit. (319 aa)
	AFK51629.1	Peptide ABC transporter, permease protein. (313 aa)
	AFK51630.1	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component. (323 aa)
	AFK51631.1	Oligopeptide binding protein APPA. (605 aa)
	AFK51821.1	Binding-protein-dependent transport systems inner membrane component. (637 aa)
	AFK51822.1	Binding-protein-dependent transporter inner membrane component. (370 aa)

Your Current Organism:

Thermogladius calderae

NCBI taxonomy Id: 1184251
Other names: T. calderae 1633, Thermogladius calderae 1633

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFK51584.1	AFK51585.1	TCELL_1161	TCELL_1162	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	0.993
AFK51584.1	AFK51629.1	TCELL_1161	TCELL_1206	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Peptide ABC transporter, permease protein.	0.897
AFK51584.1	AFK51821.1	TCELL_1161	TCELL_1399	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Binding-protein-dependent transport systems inner membrane component.	0.746
AFK51584.1	AFK51822.1	TCELL_1161	TCELL_1400	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Binding-protein-dependent transporter inner membrane component.	0.544
AFK51585.1	AFK51584.1	TCELL_1162	TCELL_1161	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	0.993
AFK51585.1	AFK51629.1	TCELL_1162	TCELL_1206	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Peptide ABC transporter, permease protein.	0.969
AFK51585.1	AFK51630.1	TCELL_1162	TCELL_1207	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component.	0.680
AFK51585.1	AFK51631.1	TCELL_1162	TCELL_1208	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Oligopeptide binding protein APPA.	0.484
AFK51585.1	AFK51821.1	TCELL_1162	TCELL_1399	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Binding-protein-dependent transport systems inner membrane component.	0.879
AFK51585.1	AFK51822.1	TCELL_1162	TCELL_1400	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	Binding-protein-dependent transporter inner membrane component.	0.810
AFK51629.1	AFK51584.1	TCELL_1206	TCELL_1161	Peptide ABC transporter, permease protein.	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	0.897
AFK51629.1	AFK51585.1	TCELL_1206	TCELL_1162	Peptide ABC transporter, permease protein.	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	0.969
AFK51629.1	AFK51630.1	TCELL_1206	TCELL_1207	Peptide ABC transporter, permease protein.	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component.	0.997
AFK51629.1	AFK51631.1	TCELL_1206	TCELL_1208	Peptide ABC transporter, permease protein.	Oligopeptide binding protein APPA.	0.993
AFK51629.1	AFK51822.1	TCELL_1206	TCELL_1400	Peptide ABC transporter, permease protein.	Binding-protein-dependent transporter inner membrane component.	0.884
AFK51630.1	AFK51585.1	TCELL_1207	TCELL_1162	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component.	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	0.680
AFK51630.1	AFK51629.1	TCELL_1207	TCELL_1206	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component.	Peptide ABC transporter, permease protein.	0.997
AFK51630.1	AFK51631.1	TCELL_1207	TCELL_1208	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component.	Oligopeptide binding protein APPA.	0.994
AFK51630.1	AFK51821.1	TCELL_1207	TCELL_1399	ABC-type dipeptide/oligopeptide/nickel transport systems, permease component.	Binding-protein-dependent transport systems inner membrane component.	0.878
AFK51631.1	AFK51585.1	TCELL_1208	TCELL_1162	Oligopeptide binding protein APPA.	Oligopeptide/dipeptide ABC transporter, ATPase subunit.	0.484