(9 nodes) Metallo-beta-lactamase network (Thermogladius calderae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFK50677.1	Beta-lactamase domain protein; Belongs to the UPF0173 family. (232 aa)
	rnz	Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (250 aa)
	AFK50642.1	Beta-lactamase domain protein. (653 aa)
	AFK50845.1	Beta-lactamase domain protein. (424 aa)
	AFK51010.1	Beta-lactamase domain protein. (235 aa)
	AFK51029.1	Beta-lactamase domain protein. (287 aa)
	AFK51152.1	Exonuclease of the beta-lactamase fold involved in RNA processing-like protein. (355 aa)
	AFK51533.1	Beta-lactamase domain protein. (415 aa)
	AFK51709.1	Beta-lactamase domain protein. (232 aa)

Your Current Organism:

Thermogladius calderae

NCBI taxonomy Id: 1184251
Other names: T. calderae 1633, Thermogladius calderae 1633

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFK51010.1	AFK51029.1	TCELL_0585	TCELL_0604	Beta-lactamase domain protein.	Beta-lactamase domain protein.	0.972
AFK51010.1	AFK51709.1	TCELL_0585	TCELL_1286	Beta-lactamase domain protein.	Beta-lactamase domain protein.	0.917
AFK51029.1	AFK51010.1	TCELL_0604	TCELL_0585	Beta-lactamase domain protein.	Beta-lactamase domain protein.	0.972
AFK51029.1	AFK51709.1	TCELL_0604	TCELL_1286	Beta-lactamase domain protein.	Beta-lactamase domain protein.	0.921
AFK51709.1	AFK51010.1	TCELL_1286	TCELL_0585	Beta-lactamase domain protein.	Beta-lactamase domain protein.	0.917
AFK51709.1	AFK51029.1	TCELL_1286	TCELL_0604	Beta-lactamase domain protein.	Beta-lactamase domain protein.	0.921