STRINGSTRING
oppA1 oppA1 oppB oppB oppC1 oppC1 yejF1 yejF1 oppA2 oppA2 dppB3 dppB3 dppC2 dppC2 oppD1 oppD1 appF1 appF1 ykfD1 ykfD1 oppD2 oppD2 ddpC2 ddpC2 AFL50997.1 AFL50997.1 gsiB gsiB AFL51481.1 AFL51481.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oppA1Periplasmic oligopeptide-binding protein OppA. (532 aa)
oppBOligopeptide transport system permease protein OppB. (307 aa)
oppC1Oligopeptide transport system permease protein OppC. (376 aa)
yejF1Putative ABC transporter ATP-binding protein YejF; Belongs to the ABC transporter superfamily. (542 aa)
oppA2Periplasmic oligopeptide-binding protein OppA. (549 aa)
dppB3Dipeptide transport system permease protein DppB. (318 aa)
dppC2Dipeptide transport system permease protein DppC. (319 aa)
oppD1Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (335 aa)
appF1Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (327 aa)
ykfD1Putative oligopeptide transport ATP-binding protein YkfD; Belongs to the ABC transporter superfamily. (329 aa)
oppD2Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (323 aa)
ddpC2Putative D,D-dipeptide transport system permease protein DdpC. (305 aa)
AFL50997.1Putative peptide transport system permease protein. (306 aa)
gsiBGlutathione-binding protein GsiB. (507 aa)
AFL51481.1Hypothetical protein. (67 aa)
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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