STRINGSTRING
oppA1 oppA1 oppB oppB oppC1 oppC1 yejF1 yejF1 dppC2 dppC2 ykfD1 ykfD1 oppD2 oppD2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oppA1Periplasmic oligopeptide-binding protein OppA. (532 aa)
oppBOligopeptide transport system permease protein OppB. (307 aa)
oppC1Oligopeptide transport system permease protein OppC. (376 aa)
yejF1Putative ABC transporter ATP-binding protein YejF; Belongs to the ABC transporter superfamily. (542 aa)
dppC2Dipeptide transport system permease protein DppC. (319 aa)
ykfD1Putative oligopeptide transport ATP-binding protein YkfD; Belongs to the ABC transporter superfamily. (329 aa)
oppD2Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (323 aa)
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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