Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFL48770.1 | AFL53253.1 | USDA257_c01700 | USDA257_c47170 | Hypothetical protein. | trpE(G): anthranilate synthase. | 0.534 |
| AFL48770.1 | AFL53791.1 | USDA257_c01700 | USDA257_c52660 | Hypothetical protein. | Putative aminotransferase, class IV. | 0.420 |
| AFL48770.1 | aroA | USDA257_c01700 | USDA257_c60950 | Hypothetical protein. | 3-phosphoshikimate 1-carboxyvinyltransferase AroA; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.782 |
| AFL48770.1 | aroC | USDA257_c01700 | USDA257_c06170 | Hypothetical protein. | Chorismate synthase AroC; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.725 |
| AFL48770.1 | aroH | USDA257_c01700 | USDA257_c41250 | Hypothetical protein. | Phospho-2-dehydro-3-deoxyheptonate aldolase AroH. | 0.837 |
| AFL48770.1 | aroK | USDA257_c01700 | USDA257_c50840 | Hypothetical protein. | Shikimate kinase AroK; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.539 |
| AFL48770.1 | cyaB | USDA257_c01700 | USDA257_c52960 | Hypothetical protein. | Adenylate cyclase 2. | 0.699 |
| AFL48770.1 | dapA4 | USDA257_c01700 | USDA257_c35130 | Hypothetical protein. | Dihydrodipicolinate synthase DapA; Belongs to the DapA family. | 0.471 |
| AFL48770.1 | tyrC | USDA257_c01700 | USDA257_c50690 | Hypothetical protein. | Protein TyrC. | 0.414 |
| AFL50721.1 | AFL53253.1 | USDA257_c21390 | USDA257_c47170 | Shikimate 5-dehydrogenase. | trpE(G): anthranilate synthase. | 0.603 |
| AFL50721.1 | aroA | USDA257_c21390 | USDA257_c60950 | Shikimate 5-dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase AroA; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.728 |
| AFL50721.1 | aroB | USDA257_c21390 | USDA257_c50830 | Shikimate 5-dehydrogenase. | 3-dehydroquinate synthase AroB; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.739 |
| AFL50721.1 | aroC | USDA257_c21390 | USDA257_c06170 | Shikimate 5-dehydrogenase. | Chorismate synthase AroC; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.836 |
| AFL50721.1 | aroK | USDA257_c21390 | USDA257_c50840 | Shikimate 5-dehydrogenase. | Shikimate kinase AroK; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.965 |
| AFL50721.1 | aroQ1 | USDA257_c21390 | USDA257_c33590 | Shikimate 5-dehydrogenase. | 3-dehydroquinate dehydratase AroQ; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.917 |
| AFL50721.1 | aroQ2 | USDA257_c21390 | USDA257_c56300 | Shikimate 5-dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.917 |
| AFL50721.1 | melA1 | USDA257_c21390 | USDA257_c21400 | Shikimate 5-dehydrogenase. | Protein MelA. | 0.864 |
| AFL50721.1 | pabB | USDA257_c21390 | USDA257_c52650 | Shikimate 5-dehydrogenase. | Para-aminobenzoate synthase component 1. | 0.503 |
| AFL50721.1 | pheA | USDA257_c21390 | USDA257_c60500 | Shikimate 5-dehydrogenase. | P-protein PheA. | 0.506 |
| AFL50721.1 | trpA | USDA257_c21390 | USDA257_c58910 | Shikimate 5-dehydrogenase. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.524 |
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