STRINGSTRING
arcB1 arcB1 speB2 speB2 ldc ldc arcB3 arcB3 rocD rocD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
arcB1Ornithine cyclodeaminase ArcB. (349 aa)
speB2Agmatinase SpeB; Belongs to the arginase family. (318 aa)
ldcLysine/ornithine decarboxylase Ldc; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (377 aa)
arcB3Arginase ArcB; Belongs to the arginase family. (307 aa)
rocDOrnithine aminotransferase RocD; Catalyzes the interconversion of ornithine to glutamate semialdehyde. (401 aa)
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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