Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFL49202.1 | argB | USDA257_c06070 | USDA257_c00740 | Putative acetyltransferase. | Acetylglutamate kinase ArgB; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.413 |
| AFL49202.1 | argC | USDA257_c06070 | USDA257_c32720 | Putative acetyltransferase. | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. | 0.419 |
| AFL49202.1 | argG | USDA257_c06070 | USDA257_c57340 | Putative acetyltransferase. | Argininosuccinate synthase ArgG; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.651 |
| AFL51762.1 | argB | USDA257_c31940 | USDA257_c00740 | Hypothetical protein. | Acetylglutamate kinase ArgB; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.721 |
| AFL51762.1 | argC | USDA257_c31940 | USDA257_c32720 | Hypothetical protein. | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. | 0.691 |
| AFL51762.1 | argD1 | USDA257_c31940 | USDA257_c01310 | Hypothetical protein. | Acetylornithine aminotransferase ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.443 |
| AFL51762.1 | argF1 | USDA257_c31940 | USDA257_c01320 | Hypothetical protein. | Ornithine carbamoyltransferase ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.903 |
| AFL51762.1 | argF2 | USDA257_c31940 | USDA257_c39550 | Hypothetical protein. | Ornithine carbamoyltransferase ArgF. | 0.890 |
| AFL51762.1 | argG | USDA257_c31940 | USDA257_c57340 | Hypothetical protein. | Argininosuccinate synthase ArgG; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.961 |
| AFL51762.1 | argH | USDA257_c31940 | USDA257_c50560 | Hypothetical protein. | Argininosuccinate lyase ArgH. | 0.720 |
| AFL51762.1 | argJ | USDA257_c31940 | USDA257_c50340 | Hypothetical protein. | Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.616 |
| AFL51762.1 | carA | USDA257_c31940 | USDA257_c46490 | Hypothetical protein. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.996 |
| AFL51762.1 | carB | USDA257_c31940 | USDA257_c40050 | Hypothetical protein. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.900 |
| AFL51762.1 | rocD | USDA257_c31940 | USDA257_c55320 | Hypothetical protein. | Ornithine aminotransferase RocD; Catalyzes the interconversion of ornithine to glutamate semialdehyde. | 0.443 |
| AFL52026.1 | argB | USDA257_c34670 | USDA257_c00740 | IAA acetyltransferase. | Acetylglutamate kinase ArgB; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.413 |
| AFL52026.1 | argC | USDA257_c34670 | USDA257_c32720 | IAA acetyltransferase. | N-acetyl-gamma-glutamyl-phosphate reductase ArgC; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. | 0.419 |
| AFL52026.1 | argG | USDA257_c34670 | USDA257_c57340 | IAA acetyltransferase. | Argininosuccinate synthase ArgG; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.580 |
| arcB3 | argD1 | USDA257_c55310 | USDA257_c01310 | Arginase ArcB; Belongs to the arginase family. | Acetylornithine aminotransferase ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.506 |
| arcB3 | argE | USDA257_c55310 | USDA257_c30060 | Arginase ArcB; Belongs to the arginase family. | Acetylornithine deacetylase ArgE. | 0.907 |
| arcB3 | argF1 | USDA257_c55310 | USDA257_c01320 | Arginase ArcB; Belongs to the arginase family. | Ornithine carbamoyltransferase ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.912 |
page 1 of 9