STRINGSTRING
pbpG1 pbpG1 pbpF pbpF oppA1 oppA1 oppB oppB oppC1 oppC1 yejF1 yejF1 dppC2 dppC2 ykfD1 ykfD1 oppD2 oppD2 AFL51250.1 AFL51250.1 mrcA mrcA bepC bepC nagZ nagZ penA penA ampC ampC pbpG2 pbpG2 acrF acrF ttgA ttgA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pbpG1Penicillin-binding protein 2D. (751 aa)
pbpFPenicillin-binding protein 1F. (735 aa)
oppA1Periplasmic oligopeptide-binding protein OppA. (532 aa)
oppBOligopeptide transport system permease protein OppB. (307 aa)
oppC1Oligopeptide transport system permease protein OppC. (376 aa)
yejF1Putative ABC transporter ATP-binding protein YejF; Belongs to the ABC transporter superfamily. (542 aa)
dppC2Dipeptide transport system permease protein DppC. (319 aa)
ykfD1Putative oligopeptide transport ATP-binding protein YkfD; Belongs to the ABC transporter superfamily. (329 aa)
oppD2Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily. (323 aa)
AFL51250.1Efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (335 aa)
mrcAPenicillin-binding protein 1A. (817 aa)
bepCOuter membrane efflux protein BepC. (455 aa)
nagZBeta-hexosaminidase NagZ. (357 aa)
penAPenicillin-binding protein 2. (582 aa)
ampCBeta-lactamase AmpC. (394 aa)
pbpG2Penicillin-binding protein 2D. (740 aa)
acrFAcriflavine resistance protein F. (1048 aa)
ttgAToluene efflux pump periplasmic linker protein TtgA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (405 aa)
Your Current Organism:
Sinorhizobium fredii USDA257
NCBI taxonomy Id: 1185652
Other names: S. fredii USDA 257, Sinorhizobium fredii USDA 257, Sinorhizobium fredii str. USDA 257, Sinorhizobium fredii strain USDA 257
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