8 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BFSP2	Phakinin; Belongs to the intermediate filament family. (415 aa)
	LOC103083323	Periaxin-like. (147 aa)
	MIP	Lens fiber major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (263 aa)
	BFSP1	Filensin; Belongs to the intermediate filament family. (759 aa)
	GJA3	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (406 aa)
	GJD3	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (295 aa)
	GJA8	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (442 aa)
	LOC103083050	Periaxin-like. (1142 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BFSP1	BFSP2	A0A340XNX5	A0A340X8A4	Filensin; Belongs to the intermediate filament family.	Phakinin; Belongs to the intermediate filament family.	0.860
BFSP1	GJA3	A0A340XNX5	A0A340XZD9	Filensin; Belongs to the intermediate filament family.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.724
BFSP1	GJA8	A0A340XNX5	A0A340XD81	Filensin; Belongs to the intermediate filament family.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.780
BFSP1	GJD3	A0A340XNX5	A0A340Y1C6	Filensin; Belongs to the intermediate filament family.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.653
BFSP1	LOC103083050	A0A340XNX5	A0A340XAV8	Filensin; Belongs to the intermediate filament family.	Periaxin-like.	0.638
BFSP1	LOC103083323	A0A340XNX5	A0A340XHG5	Filensin; Belongs to the intermediate filament family.	Periaxin-like.	0.518
BFSP1	MIP	A0A340XNX5	A0A340Y281	Filensin; Belongs to the intermediate filament family.	Lens fiber major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.746
BFSP2	BFSP1	A0A340X8A4	A0A340XNX5	Phakinin; Belongs to the intermediate filament family.	Filensin; Belongs to the intermediate filament family.	0.860
BFSP2	GJA3	A0A340X8A4	A0A340XZD9	Phakinin; Belongs to the intermediate filament family.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.777
BFSP2	GJA8	A0A340X8A4	A0A340XD81	Phakinin; Belongs to the intermediate filament family.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.685
BFSP2	GJD3	A0A340X8A4	A0A340Y1C6	Phakinin; Belongs to the intermediate filament family.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.670
BFSP2	MIP	A0A340X8A4	A0A340Y281	Phakinin; Belongs to the intermediate filament family.	Lens fiber major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.624
GJA3	BFSP1	A0A340XZD9	A0A340XNX5	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Filensin; Belongs to the intermediate filament family.	0.724
GJA3	BFSP2	A0A340XZD9	A0A340X8A4	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Phakinin; Belongs to the intermediate filament family.	0.777
GJA3	GJA8	A0A340XZD9	A0A340XD81	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.431
GJA3	MIP	A0A340XZD9	A0A340Y281	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Lens fiber major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.520
GJA8	BFSP1	A0A340XD81	A0A340XNX5	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Filensin; Belongs to the intermediate filament family.	0.780
GJA8	BFSP2	A0A340XD81	A0A340X8A4	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Phakinin; Belongs to the intermediate filament family.	0.685
GJA8	GJA3	A0A340XD81	A0A340XZD9	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.431
GJA8	GJD3	A0A340XD81	A0A340Y1C6	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.415