8 items (Lipotes vexillifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TMEM178A	Transmembrane protein 178A. (115 aa)
	LOC103074975	Putative fidgetin-like protein 2-like. (656 aa)
	KIAA0195	Uncharacterized protein KIAA0195 homolog. (1419 aa)
	TMEM88	Transmembrane protein 88. (159 aa)
	FNDC3A	Fibronectin type-III domain-containing protein 3A isoform X1. (1198 aa)
	FNDC3B	Fibronectin type III domain-containing protein 3B. (1206 aa)
	SYT5	Synaptotagmin-5 isoform X1. (386 aa)
	FBLN7	LOW QUALITY PROTEIN: fibulin-7. (442 aa)

Your Current Organism:

Lipotes vexillifer

NCBI taxonomy Id: 118797
Other names: L. vexillifer, Yangtze River dolphin, baiji

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBLN7	FNDC3A	A0A340YB45	A0A340XYP1	LOW QUALITY PROTEIN: fibulin-7.	Fibronectin type-III domain-containing protein 3A isoform X1.	0.734
FBLN7	FNDC3B	A0A340YB45	A0A340XZQ4	LOW QUALITY PROTEIN: fibulin-7.	Fibronectin type III domain-containing protein 3B.	0.610
FBLN7	KIAA0195	A0A340YB45	A0A340X584	LOW QUALITY PROTEIN: fibulin-7.	Uncharacterized protein KIAA0195 homolog.	0.476
FNDC3A	FBLN7	A0A340XYP1	A0A340YB45	Fibronectin type-III domain-containing protein 3A isoform X1.	LOW QUALITY PROTEIN: fibulin-7.	0.734
FNDC3A	KIAA0195	A0A340XYP1	A0A340X584	Fibronectin type-III domain-containing protein 3A isoform X1.	Uncharacterized protein KIAA0195 homolog.	0.528
FNDC3B	FBLN7	A0A340XZQ4	A0A340YB45	Fibronectin type III domain-containing protein 3B.	LOW QUALITY PROTEIN: fibulin-7.	0.610
FNDC3B	LOC103074975	A0A340XZQ4	A0A340WZA8	Fibronectin type III domain-containing protein 3B.	Putative fidgetin-like protein 2-like.	0.462
KIAA0195	FBLN7	A0A340X584	A0A340YB45	Uncharacterized protein KIAA0195 homolog.	LOW QUALITY PROTEIN: fibulin-7.	0.476
KIAA0195	FNDC3A	A0A340X584	A0A340XYP1	Uncharacterized protein KIAA0195 homolog.	Fibronectin type-III domain-containing protein 3A isoform X1.	0.528
KIAA0195	SYT5	A0A340X584	A0A340Y9B7	Uncharacterized protein KIAA0195 homolog.	Synaptotagmin-5 isoform X1.	0.506
KIAA0195	TMEM178A	A0A340X584	A0A340WFM4	Uncharacterized protein KIAA0195 homolog.	Transmembrane protein 178A.	0.438
KIAA0195	TMEM88	A0A340X584	A0A340XF65	Uncharacterized protein KIAA0195 homolog.	Transmembrane protein 88.	0.738
LOC103074975	FNDC3B	A0A340WZA8	A0A340XZQ4	Putative fidgetin-like protein 2-like.	Fibronectin type III domain-containing protein 3B.	0.462
SYT5	KIAA0195	A0A340Y9B7	A0A340X584	Synaptotagmin-5 isoform X1.	Uncharacterized protein KIAA0195 homolog.	0.506
TMEM178A	KIAA0195	A0A340WFM4	A0A340X584	Transmembrane protein 178A.	Uncharacterized protein KIAA0195 homolog.	0.438
TMEM88	KIAA0195	A0A340XF65	A0A340X584	Transmembrane protein 88.	Uncharacterized protein KIAA0195 homolog.	0.738